6OVB | pdb_00006ovb

Crystal structure of a Bacillus thuringiensis Cry1Da tryptic core variant

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6ovba3	All beta proteins	Galactose-binding domain-like	Galactose-binding domain-like	automated matches	automated matches	(Bacillus thuringiensis ) [TaxId: 1428 ],	SCOPe (2.08)
A	d6ovba2	All beta proteins	beta-Prism I	delta-Endotoxin (insectocide), middle domain	automated matches	automated matches	(Bacillus thuringiensis ) [TaxId: 1428 ],	SCOPe (2.08)
A	d6ovba1	Membrane and cell surface proteins and peptides	Toxins' membrane translocation domains	delta-Endotoxin (insectocide), N-terminal domain	automated matches	automated matches	(Bacillus thuringiensis ) [TaxId: 1428 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Endotoxin_C	e6ovbA2	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: Endotoxin_C	ECOD (1.6)
A	Endotoxin_M	e6ovbA3	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Endotoxin_M	ECOD (1.6)
A	Endotoxin_N	e6ovbA1	A: alpha arrays	X: Toxins' membrane translocation domains	H: delta-Endotoxin (insectocide), N-terminal domain (From Topology)	T: delta-Endotoxin (insectocide), N-terminal domain	F: Endotoxin_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.190.10	Mainly Alpha	Up-down Bundle	Delta-Endotoxin	domain 1	CATH (utative)
A	2.60.120.260	Mainly Beta	Sandwich	Jelly Rolls	Galactose-binding domain-like	CATH (utative)
A	2.100.10.10	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Pesticidal crystal protein, central domain	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Active core crystal toxin protein 1D	protein binding binding signaling receptor binding toxin activity	sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation biological process involved in interspecies interaction between organisms cellular process disruption of cell in another organism disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing biological process involved in interaction with host sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation biological process involved in interspecies interaction between organisms cellular process disruption of cell in another organism disruption of anatomical structure in another organism symbiont-mediated killing of host cell killing of cells of another organism cell killing biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001178	Pesticidal crystal protein, domain II	Domain
A	IPR036399	Pesticidal crystal protein, central domain superfamily	Homologous Superfamily
A	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A	IPR038979	Pesticidal crystal protein	Family
A	IPR005639	Pesticidal crystal protein, domain I	Domain
A	IPR048645	Cry1Ac-like, domain VII	Domain
A	IPR041587	Pesticidal crystal protein Cry, domain V	Domain
A	IPR005638	Pesticidal crystal protein, domain III	Domain
A	IPR036716	Pesticidal crystal protein, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.