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 6OUT | pdb_00006out

Asymmetric focused reconstruction of human norovirus GI.1 Norwalk strain VLP asymmetric unit in T=3 symmetry

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6outa_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Caliciviridae-like VP automated matches Hu/NV/NV/1968/US (Norovirus Hu/1968/US ) [TaxId: 524364 ], SCOPe (2.08)
Bd6outb_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Caliciviridae-like VP automated matches Hu/NV/NV/1968/US (Norovirus Hu/1968/US ) [TaxId: 524364 ], SCOPe (2.08)
Cd6outc_ All beta proteins Nucleoplasmin-like/VP (viral coat and capsid proteins) Positive stranded ssRNA viruses Caliciviridae-like VP automated matches Hu/NV/NV/1968/US (Norovirus Hu/1968/US ) [TaxId: 524364 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8033958 3000918 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyNorovirus P2 domain-like 8093128 3002678 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNorovirus P2 domain-like 8093128 3002678 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8033958 3000918 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNorovirus P2 domain-like 8093128 3002678 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8033958 3000918 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyAstrovirus capsid protein, P1 domain-like 8093126 3002535 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATetR_Ne6outA1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
BTetR_Ne6outB1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)
CTetR_Ne6outC1 A: alpha arraysX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: TetR_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF08435Calicivirus coat protein C-terminal (Calici_coat_C)Calicivirus coat protein C-terminal- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Capsid protein VP1 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR029053Viral coat protein subunitHomologous Superfamily
A, B, C
IPR004005Calicivirus coat proteinDomain
A, B, C
IPR013643Calicivirus coat protein C-terminalDomain
A, B, C
IPR033703Picornavirus/Calicivirus coat proteinDomain