6ORF | pdb_00006orf

Crystal structure of SpGH29


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BATP-synte6orfB1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: ATP-syntECOD (v294.1)
AATP-synte6orfA1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: ATP-syntECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (utative)
B2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (utative)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (utative)
A2.60.120.260 Mainly Beta Sandwich Jelly Rolls Galactose-binding domain-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01120Alpha-L-fucosidase (Alpha_L_fucos)Alpha-L-fucosidaseDomain
A, B
PF22633NedA-like, galactose-binding domain (F5_F8_type_C_2)NedA-like, galactose-binding domainThis galactose-binding domain is found in Sialidase from Micromonospora viridifaciens (NedA), which releases sialic acids for use as carbon and energy sources. This domain shows a jelly-roll topology [3]. Domain