6OOR | pdb_00006oor

Structure of 1B1 bound to mouse CD1d


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8037146 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054657 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth H]bCoV_S1_Ne6oorH1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: bCoV_S1_NECOD (v294.1)
C [auth L]bCoV_S1_Ne6oorL1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: bCoV_S1_NECOD (v294.1)
BbCoV_S1_Ne6oorB1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: bCoV_S1_NECOD (v294.1)
AbCoV_S1_Ne6oorA1 A: a/b three-layered sandwichesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: bCoV_S1_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
D [auth H]Fab 1B1 VH-CH1 Rattus norvegicus (Norway rat) IGHV5S23*01, IGHJ1*01, IGHG2B*01 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-2B_KAPPA IMGT (202612-0)
C [auth L]Fab 1B1 L-KAPPA Rattus norvegicus (Norway rat) IGKV9S1*01, IGKJ2-3*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-2B_KAPPA IMGT (202612-0)
CD1d B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202612-0)
CD1d I-ALPHA-LIKE Mus musculus (house mouse) CD1D1*01 G-LIKE-DOMAIN G-ALPHA1-LIKE, G-LIKE-DOMAIN G-ALPHA2-LIKE, C-LIKE-DOMAIN C-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202612-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth H]Heavy ChainIGHV5 -antigen-presenting glycoprotein cd1d1SAbDab (2026-03-27)
C [auth L]Light ChainIGKV9 Kappaantigen-presenting glycoprotein cd1d1SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth L]PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth H]Antibody 1B1 Heavy chain---
C [auth L]Antibody 1B1 Light chain-
Beta-2-microglobulin
Antigen-presenting glycoprotein CD1d1