6OM2
Crystal structure of atypical integrin alphaV beta8 with proTGF-beta1 ligand peptide
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Integrin alpha N-terminal domain | 8041564 | 3000314 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Integrin domains | 8055305 | 3002062 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Integrin domains | 8055305 | 3002062 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Integrin alpha N-terminal domain | 8041564 | 3000314 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Integrin_alpha2_1st | e6om2A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Integrin_alpha2_1st | ECOD (1.6) |
A | FG-GAP_1st | e6om2A1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: FG-GAP_1st | ECOD (1.6) |
C | Integrin_alpha2_1st | e6om2C2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Integrin_alpha2_1st | ECOD (1.6) |
C | FG-GAP_1st | e6om2C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: FG-GAP_1st | ECOD (1.6) |
B | INB | e6om2B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: INB | ECOD (1.6) |
B | Integrin_beta | e6om2B1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Integrin_beta | ECOD (1.6) |
D | INB | e6om2D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: INB | ECOD (1.6) |
D | Integrin_beta | e6om2D2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Integrin_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.130.10.130 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
A | 2.60.40.1460 | Mainly Beta | Sandwich | Immunoglobulin-like | Integrin domains. Chain A, domain 2 | CATH (utative) |
C | 2.130.10.130 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
C | 2.60.40.1460 | Mainly Beta | Sandwich | Immunoglobulin-like | Integrin domains. Chain A, domain 2 | CATH (utative) |
B | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (utative) |
D | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01839 | FG-GAP repeat (FG-GAP) | FG-GAP repeat | - | Repeat | |
PF08441 | Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1) | Integrin alpha Ig-like domain 1 | This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. | Domain | |
PF00362 | Integrin beta chain VWA domain (Integrin_beta) | Integrin beta chain VWA domain | Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. | Domain | |