6OLA | pdb_00006ola

Structure of the PCV2d virus-like particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth Ap]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
Z [auth AP]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
YA [auth Ao]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
Y [auth AO]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
XA [auth An]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
X [auth AN]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
WA [auth Am]SCOP2 FamilyCircovirus-like VP 8094354 4006869 SCOP2 (2022-06-29)
WA [auth Am]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2 (2022-06-29)
W [auth AM]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
VA [auth Al]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
V [auth AL]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
UA [auth Ak]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
U [auth AK]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
TA [auth Aj]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
T [auth AJ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
SA [auth Ai]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
S [auth AI]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
RA [auth Ah]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
R [auth AH]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
QA [auth Ag]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
Q [auth AG]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
PA [auth Af]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
P [auth AF]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
OA [auth Ae]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
O [auth AE]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
NA [auth Ad]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
N [auth AD]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
MA [auth Ac]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
M [auth AC]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
LA [auth Ab]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
L [auth AB]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
KA [auth Aa]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
K [auth AA]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
JA [auth AZ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
J [auth A9]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
IA [auth AY]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
I [auth A8]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
HB [auth Ax]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
HA [auth AX]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
H [auth A7]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
GB [auth Aw]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
GA [auth AW]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
G [auth A6]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
FB [auth Av]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
FA [auth AV]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
F [auth A5]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
EB [auth Au]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
EA [auth AU]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
E [auth A4]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
DB [auth At]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
DA [auth AT]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
D [auth A3]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
CB [auth As]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
CA [auth AS]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
C [auth A2]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
BB [auth Ar]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
BA [auth AR]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
B [auth A1]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
AB [auth Aq]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
AA [auth AQ]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)
A [auth A0]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8094355 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth Ap]V-sete6olaAp1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
Z [auth AP]V-sete6olaAP1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
YA [auth Ao]V-sete6olaAo1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
Y [auth AO]V-sete6olaAO1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
XA [auth An]V-sete6olaAn1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
X [auth AN]V-sete6olaAN1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
WA [auth Am]V-sete6olaAm1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
W [auth AM]V-sete6olaAM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
VA [auth Al]V-sete6olaAl1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
V [auth AL]V-sete6olaAL1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
UA [auth Ak]V-sete6olaAk1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
U [auth AK]V-sete6olaAK1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
TA [auth Aj]V-sete6olaAj1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
T [auth AJ]V-sete6olaAJ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
SA [auth Ai]V-sete6olaAi1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
S [auth AI]V-sete6olaAI1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
RA [auth Ah]V-sete6olaAh1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
R [auth AH]V-sete6olaAH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
QA [auth Ag]V-sete6olaAg1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
Q [auth AG]V-sete6olaAG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
PA [auth Af]V-sete6olaAf1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
P [auth AF]V-sete6olaAF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
OA [auth Ae]V-sete6olaAe1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
O [auth AE]V-sete6olaAE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
NA [auth Ad]V-sete6olaAd1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
N [auth AD]V-sete6olaAD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
MA [auth Ac]V-sete6olaAc1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
M [auth AC]V-sete6olaAC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
LA [auth Ab]V-sete6olaAb1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
L [auth AB]V-sete6olaAB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
KA [auth Aa]V-sete6olaAa1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
K [auth AA]V-sete6olaAA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
JA [auth AZ]V-sete6olaAZ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
J [auth A9]V-sete6olaA91 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
IA [auth AY]V-sete6olaAY1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
I [auth A8]V-sete6olaA81 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
HB [auth Ax]V-sete6olaAx1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
HA [auth AX]V-sete6olaAX1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
H [auth A7]V-sete6olaA71 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
GB [auth Aw]V-sete6olaAw1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
GA [auth AW]V-sete6olaAW1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
G [auth A6]V-sete6olaA61 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
FB [auth Av]V-sete6olaAv1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
FA [auth AV]V-sete6olaAV1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
F [auth A5]V-sete6olaA51 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
EB [auth Au]V-sete6olaAu1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
EA [auth AU]V-sete6olaAU1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
E [auth A4]V-sete6olaA41 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
DB [auth At]V-sete6olaAt1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
DA [auth AT]V-sete6olaAT1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
D [auth A3]V-sete6olaA31 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
CB [auth As]V-sete6olaAs1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
CA [auth AS]V-sete6olaAS1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
C [auth A2]V-sete6olaA21 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
BB [auth Ar]V-sete6olaAr1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
BA [auth AR]V-sete6olaAR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
B [auth A1]V-sete6olaA11 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
AB [auth Aq]V-sete6olaAq1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
AA [auth AQ]V-sete6olaAQ1 A: a/b three-layered sandwichesX: P-loop domains-likeH: DUF1107-likeT: DUF1107-likeF: V-setECOD (v294.1)
A [auth A0]Peptidase_M13,Peptidase_M13_Ne6olaA01 A: a/b three-layered sandwichesX: P-loop domains-likeH: Hemagglutinin HA2 chainT: Hemagglutinin HA2 chainF: Peptidase_M13,Peptidase_M13_NECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
DNA (5'-D(P*CP*CP*GP*G)-3')---
Capsid protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR038652Circovirus capsid superfamilyHomologous Superfamily
IPR003383Circovirus capsid proteinFamily