6OL7 | pdb_00006ol7

Crystal structure of glVRC01 scFv in complex with anti-idiotype iv8 scFv

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P [auth Q]	d6ol7q_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
N [auth O]	d6ol7o_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
I [auth J]	d6ol7j_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D	d6ol7d_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
L [auth M]	d6ol7m_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H [auth I]	d6ol7i_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G [auth H]	d6ol7h_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6ol7c1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6ol7c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M [auth N]	d6ol7n1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
M [auth N]	d6ol7n2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K [auth L]	d6ol7l1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
K [auth L]	d6ol7l2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d6ol7f1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d6ol7f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6ol7b1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6ol7b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
O [auth P]	d6ol7p_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
J [auth K]	d6ol7k_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E	d6ol7e_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6ol7a_	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	(Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth Q]	Lys	e6ol7Q1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
N [auth O]	Lys	e6ol7O1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
I [auth J]	Lys	e6ol7J1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
D	PDEase_I	e6ol7D1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: PDEase_I	ECOD (v294.1)
L [auth M]	Lys	e6ol7M1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
H [auth I]	PDEase_I	e6ol7I1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: PDEase_I	ECOD (v294.1)
G [auth H]	Lys	e6ol7H1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
C	Lys	e6ol7C1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
M [auth N]	Lys	e6ol7N1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
K [auth L]	Lys	e6ol7L1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
F	Lys	e6ol7F1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
B	PDEase_I	e6ol7B1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: PDEase_I	ECOD (v294.1)
O [auth P]	Lys	e6ol7P1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
J [auth K]	Lys	e6ol7K1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)
E	PDEase_I	e6ol7E1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: PDEase_I	ECOD (v294.1)
A	Lys	e6ol7A1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Lys	ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
D, I [auth J], N [auth O], P [auth Q]	scFv iv8 anti-idiotype	V-KAPPA	Homo sapiens (human)	IGKV8-3001, IGKJ101	V-DOMAIN V-KAPPA	IG	SCFV-HEAVY-KAPPA	IMGT (202615-0)
C, G [auth H], H [auth I], L [auth M]	scFv iv8 anti-idiotype	VH	Homo sapiens (human)	IGHV1-202, IGHJ101	V-DOMAIN VH	IG	SCFV-HEAVY-KAPPA	IMGT (202615-0)
B, F, K [auth L], M [auth N]	scFv iv8 anti-idiotype	V-KAPPA	Homo sapiens (human)	IGKV3-1101, IGKJ201, IGKJ202, IGKJ203, IGKJ2*04	V-DOMAIN V-KAPPA	IG	SCFV-HEAVY-KAPPA	IMGT (202615-0)
A, E, J [auth K], O [auth P]	scFv iv8 anti-idiotype	VH	Homo sapiens (human)	IGHV5-901, IGHV5-9-101, IGHV5-9-301, IGHV5-9-201, IGHV5-904, IGHJ101, IGHJ1*02	V-DOMAIN VH	IG	SCFV-HEAVY-KAPPA	IMGT (202615-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
D, I [auth J], N [auth O], P [auth Q]	Light Chain	IGKV8	Kappa	-	SAbDab (2026-04-24)
C, G [auth H], H [auth I], L [auth M]	Heavy Chain	IGHV1	-	-	SAbDab (2026-04-24)
B, F, K [auth L], M [auth N]	Light Chain	IGKV3	Kappa	-	SAbDab (2026-04-24)
A, E, J [auth K], O [auth P]	Heavy Chain	IGHV5	-	-	SAbDab (2026-04-24)