6OL7 | pdb_00006ol7

Crystal structure of glVRC01 scFv in complex with anti-idiotype iv8 scFv

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
P [auth Q]d6ol7q_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
N [auth O]d6ol7o_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
I [auth J]d6ol7j_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Dd6ol7d_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
L [auth M]d6ol7m_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth I]d6ol7i_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth H]d6ol7h_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6ol7c1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6ol7c2 Artifacts Tags Tags Tags C-terminal Tags (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
M [auth N]d6ol7n1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
M [auth N]d6ol7n2 Artifacts Tags Tags Tags C-terminal Tags (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth L]d6ol7l1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
K [auth L]d6ol7l2 Artifacts Tags Tags Tags C-terminal Tags (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6ol7f1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6ol7f2 Artifacts Tags Tags Tags C-terminal Tags (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6ol7b1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6ol7b2 Artifacts Tags Tags Tags C-terminal Tags (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
O [auth P]d6ol7p_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
J [auth K]d6ol7k_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed6ol7e_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ad6ol7a_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
P [auth Q]V-sete6ol7Q1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
N [auth O]V-sete6ol7O1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
I [auth J]V-sete6ol7J1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
DV-sete6ol7D1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
L [auth M]V-set_8e6ol7M1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
H [auth I]V-set_8e6ol7I1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
G [auth H]V-set_8e6ol7H1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
CV-set_8e6ol7C1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
M [auth N]V-sete6ol7N1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
K [auth L]V-sete6ol7L1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
FV-sete6ol7F1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
BV-sete6ol7B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
O [auth P]V-set_12e6ol7P1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
J [auth K]V-set_12e6ol7K1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
EV-set_12e6ol7E1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)
AV-set_12e6ol7A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_12ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
D,
I [auth J],
N [auth O],
P [auth Q]		scFv iv8 anti-idiotype V-KAPPA Homo sapiens (human) IGKV8-30*01, IGKJ1*01 V-DOMAIN V-KAPPA IG SCFV-HEAVY-KAPPA IMGT (202549-0)
C,
G [auth H],
H [auth I],
L [auth M]		scFv iv8 anti-idiotype VH Homo sapiens (human) IGHV1-2*02, IGHJ1*01 V-DOMAIN VH IG SCFV-HEAVY-KAPPA IMGT (202549-0)
B,
F,
K [auth L],
M [auth N]		scFv iv8 anti-idiotype V-KAPPA Homo sapiens (human) IGKV3-11*01, IGKJ2*01, IGKJ2*02, IGKJ2*03, IGKJ2*04 V-DOMAIN V-KAPPA IG SCFV-HEAVY-KAPPA IMGT (202549-0)
A,
E,
J [auth K],
O [auth P]		scFv iv8 anti-idiotype VH Homo sapiens (human) IGHV5-9*01, IGHV5-9-1*01, IGHV5-9-3*01, IGHV5-9-2*01, IGHV5-9*04, IGHJ1*01, IGHJ1*02 V-DOMAIN VH IG SCFV-HEAVY-KAPPA IMGT (202549-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D,
I [auth J],
N [auth O],
P [auth Q]		Light ChainIGKV8 Kappa-SAbDab (2025-12-19)
C,
G [auth H],
H [auth I],
L [auth M]		Heavy ChainIGHV1 --SAbDab (2025-12-19)
B,
F,
K [auth L],
M [auth N]		Light ChainIGKV3 Kappa-SAbDab (2025-12-19)
A,
E,
J [auth K],
O [auth P]		Heavy ChainIGHV5 --SAbDab (2025-12-19)