Annotations: 6OGD

Cryo-EM structure of YenTcA in its prepore state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	Arf, G-alpha	e6ogdI1	A: alpha arrays	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v295)
L	Arf, G-alpha	e6ogdL1	A: alpha arrays	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v295)
O	Arf, G-alpha	e6ogdO1	A: alpha arrays	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v295)
F	Arf, G-alpha	e6ogdF1	A: alpha arrays	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v295)
C	Arf, G-alpha	e6ogdC1	A: alpha arrays	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Arf, G-alpha	ECOD (v295)
E	AAA	e6ogdE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA	ECOD (v295)
H	AAA	e6ogdH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA	ECOD (v295)
N	AAA	e6ogdN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA	ECOD (v295)
K	AAA	e6ogdK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA	ECOD (v295)
B	Sel1	e6ogdB01	A: alpha arrays	X: Ribonuclease H-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sel1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F, I, L, O	Chitinase 2	chitin binding binding carbohydrate derivative binding chitinase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity endochitinase activity	carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate metabolic process polysaccharide metabolic process polysaccharide catabolic process carbohydrate catabolic process primary metabolic process	cellular anatomical structure extracellular region
B, E, H, K, N	Toxin subunit YenA2	-	-	cellular anatomical structure extracellular region
A, D, G, J, M	Toxin subunit YenA1	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F, I, L, O	IPR011583	Chitinase II/V-like, catalytic domain	Domain
C, F, I, L, O	IPR029070	Chitinase insertion domain superfamily	Homologous Superfamily
C, F, I, L, O	IPR050314	Glycosyl hydrolase family 18	Family
C, F, I, L, O	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C, F, I, L, O	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain
B, E, H, K, N	IPR041079	Neuraminidase-like domain	Domain
B, E, H, K, N	IPR040840	Tc toxin complex TcA, C-terminal TcB-binding domain	Domain
B, E, H, K, N	IPR046839	ABC toxin, N-terminal domain	Domain
A, D, G, J, M	IPR018003	Insecticidal toxin complex/plasmid virulence protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6OGD | pdb_00006ogd

Cryo-EM structure of YenTcA in its prepore state

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage