6O9R | pdb_00006o9r

The capsid structure of empty AAVrh.10 particles

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
D	SCOP2 Family	Parvovirinae-like VP	8093909	4003479	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	ssDNA viruses	8093910	3000931	SCOP2 (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8093910	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	Parvo_coat	e6o9rz1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
Z	Parvo_coat	e6o9rZ1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
YA [auth y]	Parvo_coat	e6o9ry1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
Y	Parvo_coat	e6o9rY1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
XA [auth x]	Parvo_coat	e6o9rx1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
X	Parvo_coat	e6o9rX1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
WA [auth w]	Parvo_coat	e6o9rw1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
W	Parvo_coat	e6o9rW1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
VA [auth v]	Parvo_coat	e6o9rv1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
V	Parvo_coat	e6o9rV1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
UA [auth u]	Parvo_coat	e6o9ru1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
U	Parvo_coat	e6o9rU1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
TA [auth t]	Parvo_coat	e6o9rt1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
T	Parvo_coat	e6o9rT1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
SA [auth s]	Parvo_coat	e6o9rs1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
S	Parvo_coat	e6o9rS1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
RA [auth r]	Parvo_coat	e6o9rr1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
R	Parvo_coat	e6o9rR1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
QA [auth q]	Parvo_coat	e6o9rq1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
Q	Parvo_coat	e6o9rQ1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
PA [auth p]	Parvo_coat	e6o9rp1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
P	Parvo_coat	e6o9rP1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
OA [auth o]	Parvo_coat	e6o9ro1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
O	Parvo_coat	e6o9rO1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
NA [auth n]	Parvo_coat	e6o9rn1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
N	Parvo_coat	e6o9rN1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
MA [auth m]	Parvo_coat	e6o9rm1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
M	Parvo_coat	e6o9rM1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
LA [auth l]	Parvo_coat	e6o9rl1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
L	Parvo_coat	e6o9rL1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
KA [auth k]	Parvo_coat	e6o9rk1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
K	Parvo_coat	e6o9rK1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
JA [auth j]	Parvo_coat	e6o9rj1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
J	Parvo_coat	e6o9rJ1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
IA [auth i]	Parvo_coat	e6o9ri1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
I	Parvo_coat	e6o9rI1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
HB [auth 8]	Parvo_coat	e6o9r81	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
HA [auth h]	Parvo_coat	e6o9rh1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
H	Parvo_coat	e6o9rH1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
GB [auth 7]	Parvo_coat	e6o9r71	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
GA [auth g]	Parvo_coat	e6o9rg1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
G	Parvo_coat	e6o9rG1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
FB [auth 6]	Parvo_coat	e6o9r61	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
FA [auth f]	Parvo_coat	e6o9rf1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
F	Parvo_coat	e6o9rF1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
EB [auth 5]	Parvo_coat	e6o9r51	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
EA [auth e]	Parvo_coat	e6o9re1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
E	Parvo_coat	e6o9rE1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
DB [auth 4]	Parvo_coat	e6o9r41	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
DA [auth d]	Parvo_coat	e6o9rd1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
D	Parvo_coat	e6o9rD1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
CB [auth 3]	Parvo_coat	e6o9r31	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
CA [auth c]	Parvo_coat	e6o9rc1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
C	Parvo_coat	e6o9rC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
BB [auth 2]	Parvo_coat	e6o9r21	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
BA [auth b]	Parvo_coat	e6o9rb1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
B	Parvo_coat	e6o9rB1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
AB [auth 1]	Parvo_coat	e6o9r11	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
AA [auth a]	Parvo_coat	e6o9ra1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)
A	Parvo_coat	e6o9rA1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Parvo_coat	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily