6O90 | pdb_00006o90

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
EA [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8096470 3000995 SCOP2B (2022-06-29)
I [auth j]SCOP2B SuperfamilyRibosomal protein S10 8096432 3001336 SCOP2B (2022-06-29)
H [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8096496 3000100 SCOP2B (2022-06-29)
G [auth h]SCOP2B SuperfamilyRibosomal protein S8 8096444 3000709 SCOP2B (2022-06-29)
F [auth g]SCOP2B SuperfamilyRibosomal protein S7 8096426 3000799 SCOP2B (2022-06-29)
E [auth f]SCOP2B SuperfamilyRibosomal protein S6 8096424 3001323 SCOP2B (2022-06-29)
WA [auth 6]SCOP2 FamilyRibosomal protein L36 8096455 4003715 SCOP2 (2022-06-29)
WA [auth 6]SCOP2 SuperfamilyRibosomal protein L36 8096456 3001346 SCOP2 (2022-06-29)
VA [auth 5]SCOP2B SuperfamilyL35p-like 8096472 3000790 SCOP2B (2022-06-29)
TA [auth 3]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096488 3001320 SCOP2B (2022-06-29)
SA [auth 2]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096480 3001320 SCOP2B (2022-06-29)
RA [auth 1]SCOP2B SuperfamilyL28p-like 8096482 3001966 SCOP2B (2022-06-29)
QA [auth 0]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096468 3001378 SCOP2B (2022-06-29)
PA [auth Z]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096462 3000713 SCOP2B (2022-06-29)
OA [auth Y]SCOP2B SuperfamilyL28p-like 8096494 3001966 SCOP2B (2022-06-29)
NA [auth X]SCOP2B SuperfamilyRibosomal L27 protein-like 8096476 3000539 SCOP2B (2022-06-29)
LA [auth V]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096466 3000334 SCOP2B (2022-06-29)
KA [auth U]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8096434 3000210 SCOP2B (2022-06-29)
JA [auth T]SCOP2B SuperfamilyRibosomal protein L22 8096452 3001078 SCOP2B (2022-06-29)
IA [auth S]SCOP2B Superfamilyl21p-like 8096478 3002005 SCOP2B (2022-06-29)
HA [auth R]SCOP2B SuperfamilyRibosomal protein L20 8096474 3000563 SCOP2B (2022-06-29)
GA [auth Q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096486 3000334 SCOP2B (2022-06-29)
FA [auth P]SCOP2B SuperfamilyTranslational machinery components 8096446 3000571 SCOP2B (2022-06-29)
DA [auth N]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096458 3000884 SCOP2B (2022-06-29)
C [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8096490 3001473 SCOP2B (2022-06-29)
CA [auth M]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8096450 3001045 SCOP2B (2022-06-29)
BA [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8096438 3000433 SCOP2B (2022-06-29)
AA [auth K]SCOP2B SuperfamilyRibosomal protein L13 8096498 3001134 SCOP2B (2022-06-29)
Y [auth F]SCOP2B SuperfamilyRL5-like 8096440 3001709 SCOP2B (2022-06-29)
X [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096460 3001146 SCOP2B (2022-06-29)
W [auth D]SCOP2B SuperfamilyTranslational proteins 8096430 3000811 SCOP2B (2022-06-29)
R [auth s]SCOP2B SuperfamilyRibosomal protein S19 8096436 3000686 SCOP2B (2022-06-29)
P [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8096442 3000135 SCOP2B (2022-06-29)
O [auth p]SCOP2B SuperfamilyRibosomal protein S16 8096484 3000680 SCOP2B (2022-06-29)
N [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8096492 3001284 SCOP2B (2022-06-29)
M [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8096448 3000068 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8096454 3000053 SCOP2B (2022-06-29)
K [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8096428 3000135 SCOP2B (2022-06-29)
J [auth k]SCOP2B SuperfamilyTranslational machinery components 8096464 3000571 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EA [auth O]Ribosomal_L17_1e6o90O1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
I [auth j]Ribosomal_S10e6o90j1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
H [auth i]Ribosomal_S9e6o90i1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
G [auth h]Ribosomal_S8_Ne6o90h2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
G [auth h]Ribosomal_S8_Ce6o90h1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
F [auth g]Ribosomal_S7_1e6o90g1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
E [auth f]Ribosomal_S6e6o90f1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
WA [auth 6]Ribosomal_L36e6o9061 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
VA [auth 5]Ribosomal_L35pe6o9051 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
UA [auth 4]Ribosomal_L34e6o9041 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
TA [auth 3]Ribosomal_L33e6o9031 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
SA [auth 2]Ribosomal_L32pe6o9021 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
RA [auth 1]Ribosomal_L31e6o9011 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
QA [auth 0]Ribosomal_L30e6o9001 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
PA [auth Z]Ribosomal_L29e6o90Z1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
OA [auth Y]Ribosomal_L28e6o90Y1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
NA [auth X]Ribosomal_L27e6o90X1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
D [auth e]Ribosomal_S5_Ce6o90e1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
D [auth e]Ribosomal_S5e6o90e2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
MA [auth W]Ribosomal_L25pe6o90W1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
LA [auth V]ribosomal_L24_1e6o90V1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
KA [auth U]Ribosomal_L23_2e6o90U1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
JA [auth T]Ribosomal_L22e6o90T1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
IA [auth S]Ribosomal_L21pe6o90S1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
HA [auth R]Ribosomal_L20e6o90R1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
GA [auth Q]Ribosomal_L19e6o90Q1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
FA [auth P]Ribosomal_L18pe6o90P1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
DA [auth N]Ribosomal_L16e6o90N1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
C [auth d]S4e6o90d1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
CA [auth M]Ribosomal_L27Ae6o90M1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
BA [auth L]Ribosomal_L14e6o90L1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
AA [auth K]Ribosomal_L13e6o90K1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
Z [auth G]Ribosomal_L6e6o90G1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
Z [auth G]Ribosomal_L6_1e6o90G2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
Y [auth F]Ribosomal_L5_Ce6o90F1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
X [auth E]Ribosomal_L4e6o90E1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
W [auth D]Ribosomal_L3e6o90D1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
V [auth C]Ribosomal_L2_1e6o90C1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
V [auth C]Ribosomal_L2_Ce6o90C2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
B [auth c]Ribosomal_S3_Ce6o90c2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
B [auth c]KH_2_1e6o90c1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
S [auth t]Ribosomal_S20pe6o90t1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
R [auth s]Ribosomal_S19e6o90s1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Q [auth r]Ribosomal_S18e6o90r1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
P [auth q]Ribosomal_S17_1e6o90q1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
O [auth p]Ribosomal_S16_1e6o90p1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
N [auth o]Ribosomal_S15_1e6o90o1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
M [auth n]Ribosomal_S14e6o90n1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
L [auth m]Ribosomal_S13_1e6o90m1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
K [auth l]Ribosom_S12_S23e6o90l1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
J [auth k]Ribosomal_S11e6o90k1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EA [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
EA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
WA [auth 6]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
VA [auth 5]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
UA [auth 4]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
TA [auth 3]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
SA [auth 2]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
RA [auth 1]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
QA [auth 0]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PA [auth Z]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
OA [auth Y]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
NA [auth X]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
LA [auth V]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
LA [auth V]PF00467KOW motif (KOW)KOW motif- Family
KA [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
JA [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
IA [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
IA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
HA [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
HA [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
GA [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
GA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
FA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
FA [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
DA [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
DA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
CA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
CA [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
BA [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
BA [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
AA [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
AA [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
Z [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
Z [auth G]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
Y [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
Y [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
Y [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
X [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
X [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
X [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
W [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
W [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
W [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
V [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
V [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
V [auth C]PF07650KH domain (KH_2)KH domainDomain
V [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EA [auth O]50S ribosomal protein L17
I [auth j]30S ribosomal protein S10
H [auth i]30S ribosomal protein S9
G [auth h]30S ribosomal protein S8
F [auth g]30S ribosomal protein S7
E [auth f]30S ribosomal protein S6
WA [auth 6]50S ribosomal protein L36
VA [auth 5]50S ribosomal protein L35
UA [auth 4]50S ribosomal protein L34
TA [auth 3]50S ribosomal protein L33
SA [auth 2]50S ribosomal protein L32
RA [auth 1]50S ribosomal protein L31 type B
QA [auth 0]50S ribosomal protein L30
PA [auth Z]50S ribosomal protein L29
OA [auth Y]50S ribosomal protein L28
NA [auth X]50S ribosomal protein L27
D [auth e]30S ribosomal protein S5
MA [auth W]50S ribosomal protein L25---
LA [auth V]50S ribosomal protein L24
KA [auth U]50S ribosomal protein L23
JA [auth T]50S ribosomal protein L22
IA [auth S]50S ribosomal protein L21
HA [auth R]50S ribosomal protein L20
GA [auth Q]50S ribosomal protein L19
FA [auth P]50S ribosomal protein L18
DA [auth N]50S ribosomal protein L16
C [auth d]30S ribosomal protein S4
CA [auth M]50S ribosomal protein L15
BA [auth L]50S ribosomal protein L14
AA [auth K]50S ribosomal protein L13
Z [auth G]50S ribosomal protein L6
Y [auth F]50S ribosomal protein L5
X [auth E]50S ribosomal protein L4
W [auth D]50S ribosomal protein L3
V [auth C]50S ribosomal protein L2
U [auth B]4S rRNA---
T [auth A]23S rRNA---
B [auth c]30S ribosomal protein S3
S [auth t]30S ribosomal protein S20
R [auth s]30S ribosomal protein S19
Q [auth r]30S ribosomal protein S18
P [auth q]30S ribosomal protein S17
O [auth p]30S ribosomal protein S16
N [auth o]30S ribosomal protein S15
M [auth n]30S ribosomal protein S14 type Z
L [auth m]30S ribosomal protein S13
K [auth l]30S ribosomal protein S12
J [auth k]30S ribosomal protein S11
A [auth a]16S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
EA [auth O]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
EA [auth O]IPR000456Large ribosomal subunit protein bL17Family
I [auth j]IPR001848Small ribosomal subunit protein uS10Family
I [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
H [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
H [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
H [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth i]IPR000754Small ribosomal subunit protein uS9Family
H [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
G [auth h]IPR000630Small ribosomal subunit protein uS8Family
G [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
F [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth g]IPR000235Small ribosomal subunit protein uS7Family
F [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
F [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
E [auth f]IPR000529Small ribosomal subunit protein bS6Family
E [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
WA [auth 6]IPR000473Large ribosomal subunit protein bL36Family
WA [auth 6]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
VA [auth 5]IPR021137Large ribosomal subunit protein bL35-likeFamily
VA [auth 5]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
VA [auth 5]IPR001706Large ribosomal subunit protein bL35Family
VA [auth 5]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
UA [auth 4]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
UA [auth 4]IPR000271Large ribosomal subunit protein bL34Family
TA [auth 3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
TA [auth 3]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
TA [auth 3]IPR001705Large ribosomal subunit protein bL33Family
TA [auth 3]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
SA [auth 2]IPR002677Large ribosomal subunit protein bL32Family
SA [auth 2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth 2]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
RA [auth 1]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
RA [auth 1]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
RA [auth 1]IPR027493Large ribosomal subunit protein bL31 type BFamily
RA [auth 1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
QA [auth 0]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
QA [auth 0]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
QA [auth 0]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
QA [auth 0]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
PA [auth Z]IPR050063Universal ribosomal protein uL29Family
PA [auth Z]IPR001854Large ribosomal subunit protein uL29Family
PA [auth Z]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
PA [auth Z]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
OA [auth Y]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
OA [auth Y]IPR050096Bacterial ribosomal protein bL28Family
OA [auth Y]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
OA [auth Y]IPR026569Large ribosomal subunit protein bL28Family
OA [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
NA [auth X]IPR001684Large ribosomal subunit protein bL27Family
NA [auth X]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
D [auth e]IPR000851Small ribosomal subunit protein uS5Family
D [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
D [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LA [auth V]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
LA [auth V]IPR003256Large ribosomal subunit protein uL24Family
LA [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
LA [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LA [auth V]IPR005824KOWDomain
LA [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
LA [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
KA [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
KA [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
KA [auth U]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
KA [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
JA [auth T]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
JA [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
JA [auth T]IPR001063Large ribosomal subunit protein uL22Family
JA [auth T]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
JA [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
IA [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
IA [auth S]IPR001787Large ribosomal subunit protein bL21Family
IA [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
HA [auth R]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
HA [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
HA [auth R]IPR005813Large ribosomal subunit protein bL20Family
GA [auth Q]IPR001857Large ribosomal subunit protein bL19Family
GA [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
GA [auth Q]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
GA [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
FA [auth P]IPR057268Large ribosomal subunit protein uL18Family
FA [auth P]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
DA [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
DA [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
DA [auth N]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
DA [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
DA [auth N]IPR047873Large ribosomal subunit protein uL16Family
C [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth d]IPR002942RNA-binding S4 domainDomain
C [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth d]IPR022801Small ribosomal subunit protein uS4Family
C [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
CA [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth M]IPR030878Large ribosomal subunit protein uL15Family
CA [auth M]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CA [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
BA [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BA [auth L]IPR000218Large ribosomal subunit protein uL14Family
BA [auth L]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
BA [auth L]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
AA [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AA [auth K]IPR005822Large ribosomal subunit protein uL13Family
AA [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
AA [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
Z [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
Z [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
Z [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
Z [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
Z [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
Y [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
Y [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
Y [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
Y [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
Y [auth F]IPR002132Large ribosomal subunit protein uL5Family
Y [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
X [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
X [auth E]IPR002136Large ribosomal subunit protein uL4Family
X [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
W [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
W [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
W [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
W [auth D]IPR000597Large ribosomal subunit protein uL3Family
V [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
V [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
V [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
V [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
V [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
V [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
V [auth C]IPR002171Large ribosomal subunit protein uL2Family
B [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
B [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth c]IPR057258Small ribosomal subunit protein uS3Family
B [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth c]IPR004087K Homology domainDomain
B [auth c]IPR004044K Homology domain, type 2Domain
B [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
S [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth t]IPR002583Small ribosomal subunit protein bS20Family
R [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
R [auth s]IPR002222Small ribosomal subunit protein uS19Family
R [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
R [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Q [auth r]IPR001648Small ribosomal subunit protein bS18Family
Q [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
P [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
P [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
P [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth q]IPR000266Small ribosomal subunit protein uS17Family
O [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
O [auth p]IPR000307Small ribosomal subunit protein bS16Family
N [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
N [auth o]IPR000589Small ribosomal subunit protein uS15Family
M [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
M [auth n]IPR001209Small ribosomal subunit protein uS14Family
M [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
M [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
L [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth m]IPR001892Small ribosomal subunit protein uS13Family
L [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
K [auth l]IPR006032Small ribosomal subunit protein uS12Family
K [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth k]IPR001971Small ribosomal subunit protein uS11Family
J [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site