6O6D | pdb_00006o6d

N-terminal domain of translation initiation factor IF-3 from Helicobacter pylori

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6o6da_	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Translation initiation factor IF3, N-terminal domain	automated matches	automated matches	(Helicobacter pylori J99 ) [TaxId: 85963 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Translation initiation factor IF3, N-terminal domain	8094171	4001000	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Translation initiation factor IF3, N-terminal domain	8094172	3000407	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MS_channel_2nd	e6o6dA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: MS_channel_2nd	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.80	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Translation initiation factor 3 (IF-3), N-terminal domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Translation initiation factor IF-3	translation factor activity translation initiation factor activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	cellular component organization cellular component disassembly organelle organization organelle disassembly ribosome disassembly cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR019815	Translation initiation factor 3, C-terminal	Domain
A	IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Homologous Superfamily
A	IPR001288	Translation initiation factor 3	Family
A	IPR019814	Translation initiation factor 3, N-terminal	Domain
A	IPR019813	Translation initiation factor 3, conserved site	Conserved Site
A	IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.