6O4L | pdb_00006o4l

Structure of ALDH7A1 mutant E399D complexed with NAD

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6o4ld_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6o4lc_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6o4lb_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6o4la_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	ALDH-like	8065638	3001479	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ALDH-like	8065638	3001479	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ALDH-like	8065638	3001479	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ALDH-like	8065638	3001479	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	NDK	e6o4lD1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (develop294)
C	NDK	e6o4lC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (develop294)
B	NDK	e6o4lB1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (develop294)
A	NDK	e6o4lA1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: NDK	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
D	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
C	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
C	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
B	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
B	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)
A	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (utative)
A	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00171	Aldehyde dehydrogenase family (Aldedh)	Aldehyde dehydrogenase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Alpha-aminoadipic semialdehyde dehydrogenase	L-aminoadipate-semialdehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity aldehyde dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor betaine-aldehyde dehydrogenase (NAD+) activity aldehyde dehydrogenase (NAD+) activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor identical protein binding protein binding binding	negative regulation of protein transport regulation of localization Golgi to plasma membrane transport establishment of protein localization cellular localization regulation of cellular process post-Golgi vesicle-mediated transport regulation of protein localization transport negative regulation of biological process establishment of protein localization to plasma membrane negative regulation of transport Golgi to plasma membrane protein transport negative regulation of protein localization to plasma membrane vesicle-mediated transport negative regulation of protein transport regulation of localization Golgi to plasma membrane transport establishment of protein localization cellular localization regulation of cellular process post-Golgi vesicle-mediated transport regulation of protein localization transport negative regulation of biological process establishment of protein localization to plasma membrane negative regulation of transport Golgi to plasma membrane protein transport negative regulation of protein localization to plasma membrane vesicle-mediated transport localization negative regulation of cellular process intracellular protein localization regulation of protein localization to membrane negative regulation of protein localization regulation of biological process protein localization to cell periphery regulation of transport protein localization to plasma membrane establishment of protein localization to membrane biological regulation regulation of establishment of protein localization negative regulation of establishment of protein localization regulation of protein transport regulation of protein localization to cell periphery localization within membrane protein localization to membrane regulation of vesicle-mediated transport establishment of localization negative regulation of protein localization to membrane vesicle-mediated transport to the plasma membrane regulation of Golgi to plasma membrane protein transport protein transport regulation of cellular localization negative regulation of Golgi to plasma membrane protein transport macromolecule localization negative regulation of protein localization to cell periphery cellular process regulation of protein localization to plasma membrane Golgi vesicle transport endosome to lysosome transport intracellular transport lysosomal transport establishment of localization in cell vacuolar transport plasma membrane to endosome transport metabolic process aldehyde metabolic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process energy homeostasis amine metabolic process catabolic process choline metabolic process choline catabolic process biogenic amine catabolic process amine catabolic process negative regulation of ferroptosis negative regulation of programmed cell death regulation of programmed cell death cell death regulation of ferroptosis ferroptosis programmed cell death system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus lysine metabolic process oxoacid metabolic process L-lysine catabolic process L-amino acid catabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process carboxylic acid catabolic process small molecule metabolic process small molecule catabolic process amino acid catabolic process glycine betaine biosynthetic process from choline amino-acid betaine biosynthetic process biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process amino-acid betaine metabolic process glycine betaine biosynthetic process Golgi to endosome transport cytosolic transport negative regulation of intracellular protein transport regulation of endosome to plasma membrane protein transport regulation of intracellular transport negative regulation of endocytic recycling negative regulation of endosome to plasma membrane protein transport regulation of intracellular protein transport intracellular protein transport endocytic recycling regulation of endocytic recycling negative regulation of intracellular transport endosomal transport endosome to plasma membrane protein transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol cell periphery plasma membrane membrane Golgi membrane Golgi apparatus endomembrane system bounding membrane of organelle organelle membrane membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D	IPR044638	Aldehyde dehydrogenase family 7 member A1-like	Family
A, B, C, D	IPR029510	Aldehyde dehydrogenase, glutamic acid active site	Conserved Site
A, B, C, D	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P49419	pyridoxine-dependent epilepsy bone disease coloboma osteoporosis acute myeloid leukemia breast carcinoma colorectal cancer Disease Exacerbation epilepsy gastric cancer intellectual disability chronic kidney disease gastric neoplasm pyridoxine-dependent epilepsy caused by ALDH7A1 mutant breast cancer pyridoxine-dependent epilepsy bone disease coloboma osteoporosis acute myeloid leukemia breast carcinoma colorectal cancer Disease Exacerbation epilepsy gastric cancer intellectual disability chronic kidney disease gastric neoplasm pyridoxine-dependent epilepsy caused by ALDH7A1 mutant breast cancer cystic fibrosis disorder of glutamate decarboxylase erectile dysfunction hereditary diffuse gastric adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.