6O09 | pdb_00006o09

Structure of AtPCNA in complex with the PIP motif of ATXR6

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K	LptF_LptG	e6o09K1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: LptF_LptG	ECOD (v294.1)
I [auth H]	LptF_LptG	e6o09H1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: LptF_LptG	ECOD (v294.1)
G [auth F]	LptF_LptG	e6o09F1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: LptF_LptG	ECOD (v294.1)
E [auth D]	LptF_LptG	e6o09D1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: LptF_LptG	ECOD (v294.1)
C [auth A]	LptF_LptG	e6o09A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: LptF_LptG	ECOD (v294.1)
A [auth C]	RsmJ	e6o09C1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: RsmJ	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)
I [auth H]	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)
G [auth F]	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)
E [auth D]	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)
C [auth A]	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)
A [auth C]	3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	PF02747	Proliferating cell nuclear antigen, C-terminal domain (PCNA_C)	Proliferating cell nuclear antigen, C-terminal domain	N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA.	Domain
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	PF00705	Proliferating cell nuclear antigen, N-terminal domain (PCNA_N)	Proliferating cell nuclear antigen, N-terminal domain	N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	Uncharacterized protein	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	-	-
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	Proliferating cellular nuclear antigen 1	DNA binding binding nucleic acid binding enzyme regulator activity DNA polymerase processivity factor activity enzyme activator activity molecular function activator activity molecular function regulator activity	DNA-templated DNA replication primary metabolic process DNA metabolic process leading strand elongation nucleic acid metabolic process nucleobase-containing compound metabolic process DNA strand elongation DNA replication metabolic process cellular process DNA strand elongation involved in DNA replication macromolecule metabolic process cellular response to stimulus mismatch repair DNA-templated DNA replication primary metabolic process DNA metabolic process leading strand elongation nucleic acid metabolic process nucleobase-containing compound metabolic process DNA strand elongation DNA replication metabolic process cellular process DNA strand elongation involved in DNA replication macromolecule metabolic process cellular response to stimulus mismatch repair response to stimulus cellular response to stress DNA damage response response to stress DNA repair regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process cell cycle regulation of cell cycle translesion synthesis nucleobase-containing compound biosynthetic process DNA damage tolerance macromolecule biosynthetic process DNA synthesis involved in DNA replication nucleic acid biosynthetic process biosynthetic process DNA biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex PCNA complex nuclear protein-containing complex enzyme activator complex DNA polymerase processivity factor complex cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR001965	Zinc finger, PHD-type	Domain
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR053114	Histone-lysine N-methyltransferase ATXR5/ATXR6	Family
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR019787	Zinc finger, PHD-finger	Domain
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
B [auth I], D [auth B], F [auth E], H [auth G], J, B [auth I], D [auth B], F [auth E], H [auth G], J, L	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	IPR046938	DNA clamp superfamily	Homologous Superfamily
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	IPR000730	Proliferating cell nuclear antigen, PCNA	Family
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	IPR022649	Proliferating cell nuclear antigen, PCNA, C-terminal	Domain
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	IPR022659	Proliferating cell nuclear antigen, PCNA, conserved site	Conserved Site
A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], A [auth C], C [auth A], E [auth D], G [auth F], I [auth H], K	IPR022648	Proliferating cell nuclear antigen, PCNA, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.