Annotations: 6NUD

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth P]	SCOP2B Superfamily	CRISPR-associated proteins	8096136	3001554	SCOP2B (2022-06-29)
K [auth O]	SCOP2B Superfamily	CRISPR-associated proteins	8096136	3001554	SCOP2B (2022-06-29)
J [auth N]	SCOP2 Family	RAMP-like	8096135	4004180	SCOP2 (2022-06-29)
J [auth N]	SCOP2 Superfamily	CRISPR-associated proteins	8096136	3001554	SCOP2 (2022-06-29)
I [auth E]	SCOP2B Superfamily	CRISPR-associated proteins	8096136	3001554	SCOP2B (2022-06-29)
H [auth C]	SCOP2B Superfamily	CRISPR-associated proteins	8096136	3001554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth P]	RAMPs	e6nudP1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: RAMPs	ECOD (1.6)
K [auth O]	RAMPs	e6nudO1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: RAMPs	ECOD (1.6)
J [auth N]	RAMPs	e6nudN1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: RAMPs	ECOD (1.6)
I [auth E]	RAMPs	e6nudE1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: RAMPs	ECOD (1.6)
H [auth C]	RAMPs	e6nudC1	A: a+b two layers	X: Alpha-beta plaits	H: Cas7-related	T: CRISPR-associated protein Cas7/Csa2-related	F: RAMPs	ECOD (1.6)
E [auth J]	UNK_F_TYPE	e6nudJ1	A: alpha bundles	X: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology)	H: CRISPR RNA silencing complex Cmr2 subunit second helical domain (From Topology)	T: CRISPR RNA silencing complex Cmr2 subunit second helical domain	F: UNK_F_TYPE	ECOD (1.6)
E [auth J]	HD	e6nudJ3	A: alpha complex topology	X: PDEase-like	H: HD-domain/PDEase-like (From Topology)	T: HD-domain/PDEase-like	F: HD	ECOD (1.6)
E [auth J]	Cas10_III_2nd	e6nudJ2	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: Cas10_III_2nd	ECOD (1.6)
E [auth J]	Cas10_III_1st	e6nudJ4	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: Cas10_III_1st	ECOD (1.6)
E [auth J]	UNK_F_TYPE	e6nudJ5	A: a+b two layers	X: Csm1 ferredoxin-like domain (From Topology)	H: Csm1 ferredoxin-like domain (From Topology)	T: Csm1 ferredoxin-like domain	F: UNK_F_TYPE	ECOD (1.6)
D [auth I]	RAMPs_1	e6nudI2	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)	T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related	F: RAMPs_1	ECOD (1.6)
D [auth I]	UNK_F_TYPE	e6nudI1	A: a+b two layers	X: Alpha-beta plaits	H: CRISPR transcript (pre-crRNA) processing endoribonuclease-related (From Topology)	T: CRISPR transcript (pre-crRNA) processing endoribonuclease-related	F: UNK_F_TYPE	ECOD (1.6)
F [auth M]	Csm2_III-A	e6nudM1	A: alpha duplicates or obligate multimers	X: Crispr-associated protein Csm2 (From Topology)	H: Crispr-associated protein Csm2 (From Topology)	T: Crispr-associated protein Csm2	F: Csm2_III-A	ECOD (1.6)
B	Csm2_III-A	e6nudB1	A: alpha duplicates or obligate multimers	X: Crispr-associated protein Csm2 (From Topology)	H: Crispr-associated protein Csm2 (From Topology)	T: Crispr-associated protein Csm2	F: Csm2_III-A	ECOD (1.6)
A	Csm2_III-A	e6nudA1	A: alpha duplicates or obligate multimers	X: Crispr-associated protein Csm2 (From Topology)	H: Crispr-associated protein Csm2 (From Topology)	T: Crispr-associated protein Csm2	F: Csm2_III-A	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth C], I [auth E], J [auth N], K [auth O], L [auth P]	CRISPR type III-associated RAMP protein Csm3	hydrolase activity catalytic activity endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
G [auth U]	target ssRNA	-	-	-
E [auth J]	CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A)	hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exonuclease activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exonuclease activity catalytic activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding endonuclease activity RNA binding nucleic acid binding transferase activity	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
D [auth I]	CRISPR type III-associated RAMP protein Csm4	RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
C [auth H]	crRNA	-	-	-
A, B, F [auth M]	CRISPR system Cms protein Csm2	RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H [auth C], I [auth E], J [auth N], K [auth O], L [auth P]	IPR052216	CRISPR-associated Csm3 endoribonuclease	Family
H [auth C], I [auth E], J [auth N], K [auth O], L [auth P]	IPR013412	CRISPR-associated RAMP Csm3	Family
H [auth C], I [auth E], J [auth N], K [auth O], L [auth P]	IPR005537	CRISPR type III-associated protein	Domain
E [auth J]	IPR000160	GGDEF domain	Domain
E [auth J]	IPR048693	CRISPR RNA silencing complex Cmr2-like, C-terminal domain	Domain
E [auth J]	IPR041062	Csm1, subunit domain B	Domain
E [auth J]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
E [auth J]	IPR013408	CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1	Family
E [auth J]	IPR052117	CRISPR-associated Cas10/Csm1 subtype III-A protein	Family
E [auth J]	IPR054767	Cas10/Cmr2, second palm domain	Domain
E [auth J]	IPR006674	HD domain	Domain
D [auth I]	IPR005537	CRISPR type III-associated protein	Domain
D [auth I]	IPR005510	CRISPR type III-associated RAMP protein Csm4	Family
D [auth I]	IPR040932	Csm4, C-terminal	Domain
A, B, F [auth M]	IPR010149	CRISPR-associated protein, Csm2 Type III-A	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.