6NSJ | pdb_00006nsj

CryoEM structure of Helicobacter pylori urea channel in closed state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySuccinate-acetate permease SatP-like 8095817 3002706 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FSkp1,Skp1_POZe6nsjF1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)
ESkp1,Skp1_POZe6nsjE1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)
DSkp1,Skp1_POZe6nsjD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)
CSkp1,Skp1_POZe6nsjC1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)
BSkp1,Skp1_POZe6nsjB1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)
ASkp1,Skp1_POZe6nsjA1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: Aconitase iron-sulfur domainT: Aconitase iron-sulfur domainF: Skp1,Skp1_POZECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Acid-activated urea channel -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003211AmiS/UreI transporterFamily
A, B, C, D, E
IPR038523AmiS/UreI transporter superfamilyHomologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B, C, D, E
OPMTransmembraneAlpha-helical polytopicUrea/amide channelUrea/amide channel

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B, C, D, E
MemProtMDAnnotated as membrane protein by MemProtMD