6NRU | pdb_00006nru

Crystal Structure of the Alpha-ribazole Phosphatase from Shigella flexneri


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ld6nrul_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Kd6nruk_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Jd6nruj_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Id6nrui_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Hd6nruh_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Gd6nrug_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Fd6nruf_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Ed6nrue_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Dd6nrud_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Cd6nruc_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Bd6nrub_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)
Ad6nrua_ Alpha and beta proteins (a/b) Phosphoglycerate mutase-like Phosphoglycerate mutase-like automated matches automated matches (Shigella flexneri 2a ) [TaxId: 42897 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
LLae6nruL1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
KLae6nruK1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
JLae6nruJ1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
ILae6nruI1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
HLae6nruH1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
GLae6nruG1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
FLae6nruF1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
ELae6nruE1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
DLae6nruD1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
CLae6nruC1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
BLae6nruB1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)
ALae6nruA1 A: alpha arraysX: PriB N-terminal domain-likeH: Ubiquitin-relatedT: Ubiquitin-likeF: LaECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00300Histidine phosphatase superfamily (branch 1) (His_Phos_1)Histidine phosphatase superfamily (branch 1)The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the p ...The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR013078Histidine phosphatase superfamily, clade-1Family
A, B, C, D, E
IPR050275Phosphoglycerate Mutase/PhosphataseFamily
A, B, C, D, E
IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active siteActive Site
A, B, C, D, E
IPR017578Alpha-ribazole phosphatase, CobCFamily
A, B, C, D, E
IPR029033Histidine phosphatase superfamilyHomologous Superfamily