6NQI
Prp8 RH domain from C. merolae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6nqia_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | Red alga (Cyanidioschyzon merolae strain 10D ) [TaxId: 280699 ], | SCOPe (2.08) |
B | d6nqib_ | Alpha and beta proteins (a/b) | Ribonuclease H-like motif | Ribonuclease H-like | automated matches | automated matches | Red alga (Cyanidioschyzon merolae strain 10D ) [TaxId: 280699 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Prp8 beta-finger domain-like | 8098059 | 4002290 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8098060 | 3000143 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ribonuclease H-like | 8098060 | 3000143 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRP8_domainIV | e6nqiA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PRP8_domainIV | ECOD (1.6) |
B | PRP8_domainIV | e6nqiB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PRP8_domainIV | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.420.230 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
B | 3.30.420.230 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12134 | PRP8 domain IV core (PRP8_domainIV) | PRP8 domain IV core | This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012591 | PRO8NT domain | Domain | |
IPR021983 | PRP8 domain IV core | Domain | |
IPR019580 | Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding | Domain | |
IPR019581 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding | Domain | |
IPR027652 | Pre-mRNA-processing-splicing factor 8 | Family | |
IPR019582 | RNA recognition motif, spliceosomal PrP8 | Domain | |
IPR043172 | Prp8 RNase domain IV, palm region | Homologous Superfamily | |
IPR012592 | PROCN domain | Domain | |
IPR042516 | Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily | Homologous Superfamily | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |