6NJC | pdb_00006njc

Crystal Structure of the Sialate O-acetylesterase from Bacteroides vulgatus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6njcb1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Phocaeicola vulgatus ATCC 8482 ) [TaxId: 435590 ],	SCOPe (2.08)
B	d6njcb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Phocaeicola vulgatus ATCC 8482 ) [TaxId: 435590 ],	SCOPe (2.08)
A	d6njca1	Alpha and beta proteins (a/b)	Flavodoxin-like	SGNH hydrolase	automated matches	automated matches	(Phocaeicola vulgatus ATCC 8482 ) [TaxId: 435590 ],	SCOPe (2.08)
A	d6njca2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Phocaeicola vulgatus ATCC 8482 ) [TaxId: 435590 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Lipase_GDSL_2	e6njcB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)
A	Lipase_GDSL_2	e6njcA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: SGNH hydrolase (From Topology)	T: SGNH hydrolase	F: Lipase_GDSL_2	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13472	GDSL-like Lipase/Acylhydrolase family (Lipase_GDSL_2)	GDSL-like Lipase/Acylhydrolase family	This family of presumed lipases and related enzymes are similar to Pfam:PF00657.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Sialate O-acetylesterase	cation binding ion binding binding metal ion binding small molecule binding lysophospholipase activity phosphatidylcholine lysophospholipase activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity phospholipase activity lipase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR013830	SGNH hydrolase-type esterase domain	Domain
A, B	IPR036514	SGNH hydrolase superfamily	Homologous Superfamily
A, B	IPR051532	Diverse Ester Hydrolysis Enzymes	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.