6NHJ | pdb_00006nhj

Atomic structures and deletion mutant reveal different capsid-binding patterns and functional significance of tegument protein pp150 in murine and human cytomegaloviruses with implications for therapeutic development

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth q]	Herpes_MCP	e6nhjq1	A: a+b complex topology	X: Major capsid protein VP5 (From Topology)	H: Major capsid protein VP5 (From Topology)	T: Major capsid protein VP5	F: Herpes_MCP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], VA [auth X], WA [auth Y], XA [auth Z], YA [auth 1], ZA [auth a]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
OA [auth y], PA [auth S], QA [auth T], RA [auth U], SA [auth V]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth k], K [auth l], L [auth m], M [auth n], N [auth o], O [auth p], P [auth q]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], VA [auth X], WA [auth Y], XA [auth Z], YA [auth 1], ZA [auth a]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
OA [auth y], PA [auth S], QA [auth T], RA [auth U], SA [auth V]	Minor capsid protein	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
AA [auth L], BA [auth M], CA [auth N], DA [auth O], EA [auth P], AA [auth L], BA [auth M], CA [auth N], DA [auth O], EA [auth P], FA [auth Q], GA [auth R], HA [auth r], IA [auth s], JA [auth t], KA [auth u], LA [auth v], MA [auth w], NA [auth x], Y [auth J], Z [auth K]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
Q [auth 2], R [auth 3], S [auth e], T [auth h], U [auth f], Q [auth 2], R [auth 3], S [auth e], T [auth h], U [auth f], V [auth i], W [auth g], X [auth j]	Tegument protein	structural molecule activity	-	virion component viral tegument
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth k], K [auth l], L [auth m], M [auth n], N [auth o], O [auth p], P [auth q]	Major capsid protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], AB [auth b], BB [auth c], CB [auth d], TA [auth z], UA [auth W], VA [auth X], WA [auth Y], XA [auth Z], YA [auth 1], ZA [auth a]	IPR002690	Herpesvirus capsid protein 2	Family
OA [auth y], PA [auth S], QA [auth T], RA [auth U], SA [auth V]	IPR004999	Herpesvirus capsid shell protein 1	Family
AA [auth L], BA [auth M], CA [auth N], DA [auth O], EA [auth P], AA [auth L], BA [auth M], CA [auth N], DA [auth O], EA [auth P], FA [auth Q], GA [auth R], HA [auth r], IA [auth s], JA [auth t], KA [auth u], LA [auth v], MA [auth w], NA [auth x], Y [auth J], Z [auth K]	IPR031385	Small capsid protein, Herpesviridae	Family
Q [auth 2], R [auth 3], S [auth e], T [auth h], U [auth f], Q [auth 2], R [auth 3], S [auth e], T [auth h], U [auth f], V [auth i], W [auth g], X [auth j]	IPR010340	Herpesvirus UL11/UL32	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.