6NFF | pdb_00006nff

Structure of X-prolyl dipeptidyl aminopeptidase from Lactobacillus helveticus


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APepX_Ce6nffA1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: PepX_CECOD (1.6)
APepX_Ne6nffA3 A: alpha bundlesX: CH domain-likeH: X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain (From Topology)T: X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domainF: PepX_NECOD (1.6)
AHydrolase_4e6nffA2 A: a/b three-layered sandwichesX: alpha/beta-Hydrolases (From Topology)H: alpha/beta-Hydrolases (From Topology)T: alpha/beta-HydrolasesF: Hydrolase_4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.1820 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Alpha/Beta hydrolase fold, catalytic domainCATH (utative)
A1.10.246.70 Mainly Alpha Orthogonal Bundle Serum Albumin Chain A, Domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08530X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain (PepX_C)X-Pro dipeptidyl-peptidase C-terminal non-catalytic domainThis domain contains a beta sandwich domain. Domain
PF09168X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal (PepX_N)X-Prolyl dipeptidyl aminopeptidase PepX, N-terminalMembers of this family adopt a secondary structure consisting of a helical bundle of eight alpha helices and three beta strands, the last alpha helix connecting to the first strand of the catalytic domain. The first strand of the N-terminus also form ...Members of this family adopt a secondary structure consisting of a helical bundle of eight alpha helices and three beta strands, the last alpha helix connecting to the first strand of the catalytic domain. The first strand of the N-terminus also forms a small parallel beta sheet with strand 5' of catalytic domain. The domain mediates dimerisation of the protein, with two proline residues present in the domain being critical for interaction [1].
Domain
PF02129X-Pro dipeptidyl-peptidase (S15 family) (Peptidase_S15)X-Pro dipeptidyl-peptidase (S15 family)Domain