Crystal structure of holo-ObiF1, a five domain nonribosomal peptide synthetase from Burkholderia diffusa
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PP-binding | e6n8eA6 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PP-binding | ECOD (1.6) |
| A | MbtH | e6n8eA7 | A: a+b two layers | X: L9 N-domain-like | H: MbtH-like (From Topology) | T: MbtH-like | F: MbtH | ECOD (1.6) |
| A | Condensation_N | e6n8eA4 | A: a+b complex topology | X: CoA-dependent acyltransferases (From Topology) | H: CoA-dependent acyltransferases (From Topology) | T: CoA-dependent acyltransferases | F: Condensation_N | ECOD (1.6) |
| A | Condensation_C_2 | e6n8eA2 | A: a+b complex topology | X: CoA-dependent acyltransferases (From Topology) | H: CoA-dependent acyltransferases (From Topology) | T: CoA-dependent acyltransferases | F: Condensation_C_2 | ECOD (1.6) |
| A | AMP-binding_2nd,AMP-binding_3rd,AMP-binding_C | e6n8eA1 | A: a+b complex topology | X: CoA-dependent acyltransferases (From Topology) | H: CoA-dependent acyltransferases (From Topology) | T: CoA-dependent acyltransferases | F: AMP-binding_2nd,AMP-binding_3rd,AMP-binding_C | ECOD (1.6) |
| A | AMP-binding_1st | e6n8eA3 | A: a+b complex topology | X: CoA-dependent acyltransferases (From Topology) | H: CoA-dependent acyltransferases (From Topology) | T: CoA-dependent acyltransferases | F: AMP-binding_1st | ECOD (1.6) |
| A | Hydrolase_4_1 | e6n8eA5 | A: a/b three-layered sandwiches | X: alpha/beta-Hydrolases (From Topology) | H: alpha/beta-Hydrolases (From Topology) | T: alpha/beta-Hydrolases | F: Hydrolase_4_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.30.559.10 | Alpha Beta | 2-Layer Sandwich | Chloramphenicol Acetyltransferase | Chloramphenicol acetyltransferase-like domain | CATH (utative) |
| A | 3.30.559.30 | Alpha Beta | 2-Layer Sandwich | Chloramphenicol Acetyltransferase | Nonribosomal peptide synthetase, condensation domain | CATH (utative) |
| A | 3.30.300.30 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (utative) |
| A | 3.40.50.1820 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Alpha/Beta hydrolase fold, catalytic domain | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR038020 | MbtH-like domain superfamily | Homologous Superfamily | |
| IPR006162 | Phosphopantetheine attachment site | PTM | |
| IPR009081 | Phosphopantetheine binding ACP domain | Domain | |
| IPR005153 | MbtH-like domain | Domain | |
| IPR020806 | Polyketide synthase-like, phosphopantetheine-binding domain | Domain | |
| IPR045851 | AMP-binding enzyme domain superfamily | Homologous Superfamily | |
| IPR010071 | Amino acid adenylation domain | Domain | |
| IPR029058 | Alpha/Beta hydrolase fold | Homologous Superfamily | |
| IPR020845 | AMP-binding, conserved site | Conserved Site | |
| IPR023213 | Chloramphenicol acetyltransferase-like domain superfamily | Homologous Superfamily | |
| IPR042099 | ANL, N-terminal domain | Homologous Superfamily | |
| IPR001242 | Condensation domain | Domain | |
| IPR036736 | ACP-like superfamily | Homologous Superfamily | |
| IPR025110 | AMP-binding enzyme, C-terminal domain | Domain | |
| IPR000873 | AMP-dependent synthetase/ligase domain | Domain | |
| IPR001031 | Thioesterase | Domain | |
| IPR020802 | Thioesterase TesA-like | Domain |
