6N55 | pdb_00006n55

Crystal structure of human uridine-cytidine kinase 2 complexed with 2'-azidouridine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6n55h_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d6n55g_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d6n55f_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d6n55e_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d6n55d_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6n55c_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6n55b_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6n55a_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	Uridine-cytidine kinase 2	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8019210	3002021	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	ATP-synt	e6n55H1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
G	ATP-synt	e6n55G1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
F	ATP-synt	e6n55F1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
E	ATP-synt	e6n55E1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
D	ATP-synt	e6n55D1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
C	ATP-synt	e6n55C1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
B	ATP-synt	e6n55B1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)
A	ATP-synt	e6n55A1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: ATP-synt	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
G	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
F	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
E	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00485	Phosphoribulokinase / Uridine kinase family (PRK)	Phosphoribulokinase / Uridine kinase family	This family matches three types of P-loop containing kinases: phosphoribulokinases [1], uridine kinases [2] and bacterial pantothenate kinases(CoaA) [3]. Arabidopsis and other organisms have a dual uridine kinase/uracil phosphoribosyltransferase pro ...	This family matches three types of P-loop containing kinases: phosphoribulokinases [1], uridine kinases [2] and bacterial pantothenate kinases(CoaA) [3]. Arabidopsis and other organisms have a dual uridine kinase/uracil phosphoribosyltransferase protein where the N-terminal region consists of a UK domain and the C-terminal region of a UPRT domain [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Uridine-cytidine kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleobase-containing compound kinase activity kinase activity nucleoside kinase activity transferase activity catalytic activity uridine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups cytidine kinase activity identical protein binding protein binding	ribose phosphate metabolic process CTP salvage CTP biosynthetic process nucleotide biosynthetic process pyrimidine ribonucleotide salvage carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process pyrimidine-containing compound salvage nucleobase-containing compound metabolic process pyrimidine nucleotide salvage nucleotide salvage metabolic compound salvage ribonucleotide biosynthetic process pyrimidine ribonucleoside triphosphate biosynthetic process ribonucleotide metabolic process ribose phosphate metabolic process CTP salvage CTP biosynthetic process nucleotide biosynthetic process pyrimidine ribonucleotide salvage carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process pyrimidine-containing compound salvage nucleobase-containing compound metabolic process pyrimidine nucleotide salvage nucleotide salvage metabolic compound salvage ribonucleotide biosynthetic process pyrimidine ribonucleoside triphosphate biosynthetic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process pyrimidine nucleoside triphosphate biosynthetic process pyrimidine-containing compound biosynthetic process phosphorus metabolic process ribose phosphate biosynthetic process pyrimidine ribonucleotide metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine-containing compound metabolic process pyrimidine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleotide metabolic process CTP metabolic process ribonucleoside triphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process pyrimidine ribonucleoside triphosphate metabolic process nucleoside triphosphate metabolic process pyrimidine nucleotide biosynthetic process pyrimidine ribonucleotide biosynthetic process response to stimulus response to stress response to wounding response to axon injury UMP salvage UMP biosynthetic process UMP metabolic process nucleoside monophosphate metabolic process pyrimidine nucleoside monophosphate metabolic process pyrimidine ribonucleoside monophosphate metabolic process nucleoside monophosphate biosynthetic process pyrimidine ribonucleoside monophosphate biosynthetic process pyrimidine nucleoside monophosphate biosynthetic process ribonucleoside monophosphate biosynthetic process cellular response to stimulus cellular response to chemical stimulus cellular response to oxygen levels response to chemical response to oxygen levels response to abiotic stimulus behavior multicellular organismal process feeding behavior	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR006083	Phosphoribulokinase/uridine kinase	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000764	Uridine kinase-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q9BZX2	testicular germ cell tumor prostate cancer testicular cancer Adenocarcinoma of Lung ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer medulloblastoma ovarian cancer atypical teratoid rhabdoid tumor endometriosis large cell medulloblastoma lung carcinoma non-small cell lung carcinoma primitive neuroectodermal tumor testicular germ cell tumor prostate cancer testicular cancer Adenocarcinoma of Lung ductal breast carcinoma in situ invasive ductal breast carcinoma lung cancer medulloblastoma ovarian cancer atypical teratoid rhabdoid tumor endometriosis large cell medulloblastoma lung carcinoma non-small cell lung carcinoma primitive neuroectodermal tumor psoriasis glioblastoma lung adenocarcinoma malignant colon neoplasm open-angle glaucoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.