6N2Y | pdb_00006n2y

Bacillus PS3 ATP synthase class 1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G	SCOP2B Superfamily	ATP synthase gamma subunit-like	8096288	3000451	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G	NTP_transf_2	e6n2yG1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
H	NTP_transf_2	e6n2yH1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
K [auth b1]	EFG_III	e6n2yb11	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: EFG_III	ECOD (v294.2)
L [auth a]	NTP_transf_2	e6n2ya1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
R [auth c5]	NTP_transf_2	e6n2yc51	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
S [auth c6]	NTP_transf_2	e6n2yc61	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
T [auth c7]	NTP_transf_2	e6n2yc71	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
V [auth c9]	NTP_transf_2	e6n2yc91	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
U [auth c8]	NTP_transf_2	e6n2yc81	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
Q [auth c4]	NTP_transf_2	e6n2yc41	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
P [auth c3]	NTP_transf_2	e6n2yc31	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
O [auth c2]	NTP_transf_2	e6n2yc21	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
N [auth c1]	NTP_transf_2	e6n2yc11	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
M [auth c0]	NTP_transf_2	e6n2yc01	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
J [auth b2]	NTP_transf_2	e6n2yb21	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
F	EFG_III	e6n2yF1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: EFG_III	ECOD (v294.2)
E	NTP_transf_2	e6n2yE1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
D	NTP_transf_2	e6n2yD1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
C	NTP_transf_2	e6n2yC1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
B	NTP_transf_2	e6n2yB1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: NTP_transf_2	ECOD (v294.2)
A	EFG_III	e6n2yA1	A: beta barrels	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: EFG_III	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G	ATP synthase gamma chain	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process proton motive force-driven plasma membrane ATP synthesis primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
H	ATP synthase epsilon chain	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
K [auth b1]	ATP synthase subunit b	-	-	-
L [auth a]	ATP synthase subunit a	-	-	-
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	ATP synthase subunit c	binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex
J [auth b2]	ATP synthase subunit b	-	-	-
I	ATP synthase subunit delta	-	-	-
D, E, F	ATP synthase subunit beta	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding monoatomic cation transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity sodium ion transmembrane transporter activity ATP-dependent activity active monoatomic ion transmembrane transporter activity sodium-transporting ATPase activity, rotational mechanism ATPase-coupled ion transmembrane transporter activity active transmembrane transporter activity ATPase activity, coupled to transmembrane movement of ions, rotational mechanism monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
A, B, C	ATP synthase subunit alpha	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G	IPR023632	ATP synthase, F1 complex, gamma subunit conserved site	Conserved Site
G	IPR000131	ATP synthase, F1 complex, gamma subunit	Family
G	IPR035968	ATP synthase, F1 complex, gamma subunit superfamily	Homologous Superfamily
H	IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	Homologous Superfamily
H	IPR036794	ATP synthase delta/epsilon subunit, C-terminal domain superfamily	Homologous Superfamily
H	IPR020546	ATP synthase, F1 complex, delta/epsilon subunit, N-terminal	Domain
H	IPR020547	ATP synthase epsilon subunit, C-terminal domain	Domain
H	IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	Family
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Family
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR000454	ATP synthase, F0 complex, subunit C	Family
M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
D, E, F	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
D, E, F	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
D, E, F	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
D, E, F	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
D, E, F	IPR050053	ATPase alpha/beta chains	Family
D, E, F	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
D, E, F	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
D, E, F	IPR003593	AAA+ ATPase domain	Domain
D, E, F	IPR005722	ATP synthase, F1 complex, beta subunit	Family
D, E, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C	IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, B, C	IPR033732	ATP synthase, F1 complex, alpha subunit nucleotide-binding domain	Domain
A, B, C	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, B, C	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, B, C	IPR000793	ATP synthase, alpha subunit, C-terminal	Domain
A, B, C	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, B, C	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
A, B, C	IPR005294	ATP synthase, F1 complex, alpha subunit	Family
A, B, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	OPM	Transmembrane	Alpha-helical polytopic	Proton or Sodium translocating F-type, V-type and A-type ATPases	V-type and F-type ATPases

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, M [auth c0], N [auth c1], O [auth c2], P [auth c3], Q [auth c4], R [auth c5], S [auth c6], T [auth c7], U [auth c8], V [auth c9]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	F₁F_o synthase, class 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.