6MZV | pdb_00006mzv

Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth JC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
BA [auth JD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
CA [auth JE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
DA [auth JF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
EA [auth KA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
FA [auth KB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
G [auth GA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
GA [auth KC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
H [auth GB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
HA [auth KD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
IA [auth KE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
J [auth GD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
K [auth GE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
KA [auth LA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
L [auth GF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
LA [auth LB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
M [auth HA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
N [auth HB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
NA [auth LD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
O [auth HC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
OA [auth LE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
P [auth HD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Q [auth HE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
R [auth HF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
S [auth IA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
U [auth IC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
W [auth IE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
X [auth IF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Y [auth JA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Z [auth JB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
V [auth ID]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
T [auth IB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
PA [auth LF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
MA [auth LC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
JA [auth KF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
I [auth GC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	BMC_1	e6mzvA2	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
C	BMC_1	e6mzvC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
D	BMC_1	e6mzvD2	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
E	BMC_1	e6mzvE2	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
F	BMC_1	e6mzvF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
B	BMC_1	e6mzvB2	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC_1	ECOD (1.6)
AA [auth JC]	BMC	e6mzvJC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
BA [auth JD]	BMC	e6mzvJD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
CA [auth JE]	BMC	e6mzvJE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
DA [auth JF]	BMC	e6mzvJF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
EA [auth KA]	BMC	e6mzvKA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
FA [auth KB]	BMC	e6mzvKB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
G [auth GA]	BMC	e6mzvGA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
GA [auth KC]	BMC	e6mzvKC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
H [auth GB]	BMC	e6mzvGB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
HA [auth KD]	BMC	e6mzvKD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
IA [auth KE]	BMC	e6mzvKE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
J [auth GD]	BMC	e6mzvGD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
K [auth GE]	BMC	e6mzvGE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
KA [auth LA]	BMC	e6mzvLA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
L [auth GF]	BMC	e6mzvGF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
LA [auth LB]	BMC	e6mzvLB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
M [auth HA]	BMC	e6mzvHA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
N [auth HB]	BMC	e6mzvHB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
NA [auth LD]	BMC	e6mzvLD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
O [auth HC]	BMC	e6mzvHC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
OA [auth LE]	BMC	e6mzvLE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
P [auth HD]	BMC	e6mzvHD1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
Q [auth HE]	BMC	e6mzvHE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
R [auth HF]	BMC	e6mzvHF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
S [auth IA]	BMC	e6mzvIA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
U [auth IC]	BMC	e6mzvIC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
W [auth IE]	BMC	e6mzvIE1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
X [auth IF]	BMC	e6mzvIF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
Y [auth JA]	BMC	e6mzvJA1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
Z [auth JB]	BMC	e6mzvJB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
V [auth ID]	BMC	e6mzvID1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
T [auth IB]	BMC	e6mzvIB1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
PA [auth LF]	BMC	e6mzvLF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
MA [auth LC]	BMC	e6mzvLC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
JA [auth KF]	BMC	e6mzvKF1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)
I [auth GC]	BMC	e6mzvGC1	A: a+b two layers	X: Alpha-beta plaits	H: CcmK-like (From Topology)	T: CcmK-like	F: BMC	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR044870	Bacterial microcompartment (BMC) circularly permuted domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037233	CcmK-like superfamily	Homologous Superfamily
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR000249	Bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR050575	Bacterial microcompartment shell	Family
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR037233	CcmK-like superfamily	Homologous Superfamily