6MZU | pdb_00006mzu

Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, closed state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth JB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Y [auth JA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
X [auth IF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
W [auth IE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
V [auth ID]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
U [auth IC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
T [auth IB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
S [auth IA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
R [auth HF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
Q [auth HE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
PA [auth LF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
P [auth HD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
OA [auth LE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
O [auth HC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
NA [auth LD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
N [auth HB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
MA [auth LC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
M [auth HA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
LA [auth LB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
L [auth GF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
KA [auth LA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
K [auth GE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
JA [auth KF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
J [auth GD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
IA [auth KE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
I [auth GC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
HA [auth KD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
H [auth GB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
GA [auth KC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
G [auth GA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
FA [auth KB]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
EA [auth KA]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
DA [auth JF]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
CA [auth JE]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
BA [auth JD]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
AA [auth JC]	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Tfb4	e6mzuF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
E	Tfb4	e6mzuE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
D	Tfb4	e6mzuD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
C	Tfb4	e6mzuC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
B	Tfb4	e6mzuB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
A	Tfb4	e6mzuA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
Z [auth JB]	Tfb4	e6mzuJB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
Y [auth JA]	Tfb4	e6mzuJA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
X [auth IF]	Tfb4	e6mzuIF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
W [auth IE]	Tfb4	e6mzuIE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
V [auth ID]	Tfb4	e6mzuID1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
U [auth IC]	Tfb4	e6mzuIC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
T [auth IB]	Tfb4	e6mzuIB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
S [auth IA]	Tfb4	e6mzuIA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
R [auth HF]	Tfb4	e6mzuHF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
Q [auth HE]	Tfb4	e6mzuHE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
PA [auth LF]	Tfb4	e6mzuLF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
P [auth HD]	Tfb4	e6mzuHD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
OA [auth LE]	Tfb4	e6mzuLE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
O [auth HC]	Tfb4	e6mzuHC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
NA [auth LD]	Tfb4	e6mzuLD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
N [auth HB]	Tfb4	e6mzuHB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
MA [auth LC]	Tfb4	e6mzuLC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
M [auth HA]	Tfb4	e6mzuHA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
LA [auth LB]	Tfb4	e6mzuLB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
L [auth GF]	Tfb4	e6mzuGF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
KA [auth LA]	Tfb4	e6mzuLA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
K [auth GE]	Tfb4	e6mzuGE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
JA [auth KF]	Tfb4	e6mzuKF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
J [auth GD]	Tfb4	e6mzuGD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
IA [auth KE]	Tfb4	e6mzuKE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
I [auth GC]	Tfb4	e6mzuGC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
HA [auth KD]	Tfb4	e6mzuKD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
H [auth GB]	Tfb4	e6mzuGB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
GA [auth KC]	Tfb4	e6mzuKC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
G [auth GA]	Tfb4	e6mzuGA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
FA [auth KB]	Tfb4	e6mzuKB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
EA [auth KA]	Tfb4	e6mzuKA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
DA [auth JF]	Tfb4	e6mzuJF1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
CA [auth JE]	Tfb4	e6mzuJE1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
BA [auth JD]	Tfb4	e6mzuJD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)
AA [auth JC]	Tfb4	e6mzuJC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Tfb4	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR044870	Bacterial microcompartment (BMC) circularly permuted domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR037233	CcmK-like superfamily	Homologous Superfamily
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR000249	Bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR050575	Bacterial microcompartment shell	Family
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], AA [auth JC], BA [auth JD], CA [auth JE], DA [auth JF], EA [auth KA], FA [auth KB], G [auth GA], GA [auth KC], H [auth GB], HA [auth KD], I [auth GC], IA [auth KE], J [auth GD], JA [auth KF], K [auth GE], KA [auth LA], L [auth GF], LA [auth LB], M [auth HA], MA [auth LC], N [auth HB], NA [auth LD], O [auth HC], OA [auth LE], P [auth HD], PA [auth LF], Q [auth HE], R [auth HF], S [auth IA], T [auth IB], U [auth IC], V [auth ID], W [auth IE], X [auth IF], Y [auth JA], Z [auth JB]	IPR037233	CcmK-like superfamily	Homologous Superfamily