6MX7 | pdb_00006mx7

CryoEM structure of chimeric Eastern Equine Encephalitis Virus: Genome-Binding Capsid N-terminal Domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth L]	SCOP2B Superfamily	Trypsin-like serine proteases	8071563	3000114	SCOP2B (2022-06-29)
C [auth I]	SCOP2B Superfamily	Trypsin-like serine proteases	8071563	3000114	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	Trypsin-like serine proteases	8071563	3000114	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	Trypsin-like serine proteases	8071563	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth L]	Mannosidase_ig	e6mx7L1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Mannosidase_ig	ECOD (develop294)
C [auth I]	Mannosidase_ig	e6mx7I1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Mannosidase_ig	ECOD (develop294)
B [auth F]	Mannosidase_ig	e6mx7F1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Mannosidase_ig	ECOD (develop294)
A [auth C]	Transpeptidase	e6mx7C1	A: alpha bundles	X: PriB N-terminal domain-like	H: a+b domain in beta-lactamase/transpeptidase-like proteins	T: a+b domain in beta-lactamase/transpeptidase-like proteins	F: Transpeptidase	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth F], C [auth I], D [auth L]	Capsid	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity RNA binding binding nucleic acid binding structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host viral life cycle viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host gene expression modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host viral life cycle symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host toll-like receptor signaling pathway symbiont-mediated perturbation of host signal transduction pathway virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular part host cell cytoplasm host intracellular region virion component virion membrane viral capsid icosahedral viral capsid T=4 icosahedral viral capsid host intracellular membrane-bounded organelle host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth F], C [auth I], D [auth L]	IPR002533	Alphavirus E3 spike glycoprotein	Domain
A [auth C], B [auth F], C [auth I], D [auth L]	IPR038055	Flaviviral glycoprotein E, dimerisation domain	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR042304	Alphavirus E2 glycoprotein, domain A	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR036253	Flavivirus glycoprotein, central and dimerisation domain superfamily	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A [auth C], B [auth F], C [auth I], D [auth L]	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR042305	Alphavirus E2 glycoprotein, domain B	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR042306	Alphavirus E2 glycoprotein, domain C	Homologous Superfamily
A [auth C], B [auth F], C [auth I], D [auth L]	IPR000936	Alphavirus E2 glycoprotein	Family
A [auth C], B [auth F], C [auth I], D [auth L]	IPR000930	Peptidase S3, togavirin	Domain
A [auth C], B [auth F], C [auth I], D [auth L]	IPR002548	Alphavirus E1 glycoprotein	Domain
A [auth C], B [auth F], C [auth I], D [auth L]	IPR000336	Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.