6MX6 | pdb_00006mx6

The Prp8 intein of Cryptococcus neoformans

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Hom_end_hint_1st	e6mx6F1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)
E	Hom_end_hint_1st	e6mx6E1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)
D	Hom_end_hint_1st	e6mx6D1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)
C	Hom_end_hint_1st	e6mx6C1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)
B	Hom_end_hint_1st	e6mx6B1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)
A	Hom_end_hint_1st	e6mx6A1	A: beta complex topology	X: Hedgehog/intein (From Homology)	H: Hedgehog/intein	T: Hint	F: Hom_end_hint_1st	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Pre-mRNA-processing-splicing factor 8	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity RNA binding snRNA binding binding nucleic acid binding U1 snRNA binding U6 snRNA binding U5 snRNA binding U2 snRNA binding pre-mRNA binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity RNA binding snRNA binding binding nucleic acid binding U1 snRNA binding U6 snRNA binding U5 snRNA binding U2 snRNA binding pre-mRNA binding pre-mRNA intronic binding	RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome RNA splicing RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process RNA processing ribonucleoprotein complex biogenesis spliceosomal tri-snRNP complex assembly protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis protein-containing complex organization spliceosomal snRNP assembly spliceosomal conformational changes to generate catalytic conformation	membrane-bounded organelle catalytic step 2 spliceosome protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex Prp19 complex membrane-bounded organelle catalytic step 2 spliceosome protein-containing complex intracellular anatomical structure catalytic complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex Prp19 complex U5 snRNP spliceosomal snRNP complex Sm-like protein family complex small nuclear ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036844	Hint domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012984	PROCT domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012591	PRO8NT domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR019580	Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027652	Pre-mRNA-processing-splicing factor 8	Family
A, B, C, D, E A, B, C, D, E, F	IPR043172	Prp8 RNase domain IV, palm region	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR012592	PROCN domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR043173	Prp8 RNase domain IV, fingers region	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR021983	PRP8 domain IV core	Domain
A, B, C, D, E A, B, C, D, E, F	IPR019581	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding	Domain
A, B, C, D, E A, B, C, D, E, F	IPR019582	RNA recognition motif, spliceosomal PrP8	Domain
A, B, C, D, E A, B, C, D, E, F	IPR042516	Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.