V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta C-terminal domain-like | 8056935 | 3000684 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018290 | 3001034 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018285 | 3002019 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Single hybrid motif | 8018293 | 3001880 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | RecA-like P-loop NTPases | 8018301 | 3002019 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | ATP synthase alpha/beta N-terminal domain-like | 8018298 | 3001034 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | AtpF-like | 8033711 | 3000828 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | ATP-synt_ab_N | e6ly8B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| B | ATP-synt_ab_C | e6ly8B4 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| B | ATP-synt_ab_Xtn | e6ly8B3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| B | ATP-synt_ab | e6ly8B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| C | ATP-synt_ab_N | e6ly8C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| C | ATP-synt_ab_C | e6ly8C2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| C | ATP-synt_ab_Xtn | e6ly8C3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| C | ATP-synt_ab | e6ly8C4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| A | ATP-synt_ab_N | e6ly8A2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| A | ATP-synt_ab_C | e6ly8A1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| A | ATP-synt_ab_Xtn | e6ly8A3 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: ATP-synt_ab_Xtn | ECOD (1.6) |
| A | ATP-synt_ab | e6ly8A4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| D | ATP-synt_ab_N | e6ly8D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| D | ATP-synt_ab_C | e6ly8D3 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| D | ATP-synt_ab | e6ly8D2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| E | ATP-synt_ab_N | e6ly8E2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| E | ATP-synt_ab_C | e6ly8E1 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| E | ATP-synt_ab | e6ly8E3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| F | ATP-synt_ab_N | e6ly8F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: ATP-synt_ab_N | ECOD (1.6) |
| F | ATP-synt_ab_C | e6ly8F2 | A: alpha superhelices | X: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology) | T: C-terminal domain of alpha and beta subunits of F1 ATP synthase | F: ATP-synt_ab_C | ECOD (1.6) |
| F | ATP-synt_ab | e6ly8F3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ATP-synt_ab | ECOD (1.6) |
| H | ATP-synt_F | e6ly8H1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: AtpF-like (From Topology) | T: AtpF-like | F: ATP-synt_F | ECOD (1.6) |
| G | ATP-synt_D | e6ly8G1 | A: alpha bundles | X: V-type proton ATPase subunit D (From Topology) | H: V-type proton ATPase subunit D (From Topology) | T: V-type proton ATPase subunit D | F: ATP-synt_D | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain | |
| PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain | |
| PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain | |
| PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family | |
| PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |














