6LVS | pdb_00006lvs

USP14 catalytic domain mutant C114S

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6lvsf_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d6lvse_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d6lvsd_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6lvsc_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6lvsb_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6lvsa_	Alpha and beta proteins (a+b)	Cysteine proteinases	Cysteine proteinases	Ubiquitin carboxyl-terminal hydrolase, UCH	Ubiquitin carboxyl-terminal hydrolase 14	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cysteine proteinases	8037489	3001808	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	7tm_2	e6lvsF1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)
E	7tm_2	e6lvsE1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)
D	7tm_2	e6lvsD1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)
C	7tm_2	e6lvsC1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)
B	7tm_2	e6lvsB1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)
A	7tm_2	e6lvsA1	A: a/b three-layered sandwiches	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Family A G protein-coupled receptor-like	F: 7tm_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
E	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
D	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
C	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
B	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)
A	3.90.70.10	Alpha Beta	Alpha-Beta Complex	Cathepsin B	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00443	Ubiquitin carboxyl-terminal hydrolase (UCH)	Ubiquitin carboxyl-terminal hydrolase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Ubiquitin carboxyl-terminal hydrolase 14	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity ubiquitin-like protein peptidase activity deubiquitinase activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity hydrolase activity catalytic activity endopeptidase activity ubiquitin-like protein peptidase activity deubiquitinase activity enzyme regulator activity molecular function inhibitor activity peptidase regulator activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity K63-linked deubiquitinase activity cysteine-type deubiquitinase activity protein-containing complex binding binding proteasome binding	cellular response to stimulus regulation of cellular process catabolic process response to stimulus regulation of cellular response to stress negative regulation of biological process negative regulation of ERAD pathway regulation of response to endoplasmic reticulum stress macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process ERAD pathway cellular response to stress regulation of response to stress response to stress cellular response to stimulus regulation of cellular process catabolic process response to stimulus regulation of cellular response to stress negative regulation of biological process negative regulation of ERAD pathway regulation of response to endoplasmic reticulum stress macromolecule catabolic process regulation of primary metabolic process negative regulation of protein catabolic process ERAD pathway cellular response to stress regulation of response to stress response to stress negative regulation of cellular process protein metabolic process negative regulation of protein metabolic process response to endoplasmic reticulum stress negative regulation of macromolecule metabolic process regulation of ERAD pathway negative regulation of response to endoplasmic reticulum stress negative regulation of catabolic process regulation of biological process negative regulation of response to stimulus regulation of protein metabolic process negative regulation of metabolic process biological regulation primary metabolic process proteasomal protein catabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process regulation of response to stimulus negative regulation of proteasomal protein catabolic process response to chemical regulation of proteasomal protein catabolic process cellular process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process chemotaxis regulation of response to external stimulus response to external stimulus regulation of chemotaxis taxis regulation of locomotion locomotion regulation of ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process negative regulation of ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process biological process involved in interspecies interaction between organisms immune response response to other organism defense response defense response to symbiont response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination protein modification by small protein removal macromolecule modification post-translational protein modification protein modification process protein K48-linked deubiquitination protein modification by small protein conjugation or removal trans-synaptic signaling synaptic signaling signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission cell communication inflammatory response	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cell surface cytoplasm cytosol presynapse presynaptic cytosol synapse cell junction cell periphery plasma membrane membrane glutamatergic synapse cytoplasmic vesicle intracellular vesicle protein-containing complex catalytic complex peptidase complex proteasome complex endopeptidase complex intracellular protein-containing complex endoplasmic reticulum endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR019954	Ubiquitin conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR044635	Ubiquitin carboxyl-terminal hydrolase 14-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR018200	Ubiquitin specific protease, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000626	Ubiquitin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR028889	Ubiquitin specific protease UPS, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Domain
A, B, C, D, E A, B, C, D, E, F	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: P54578	astrocytic tumor malignant ependymoma ovarian cancer breast cancer malignant glioma pancreatic intraductal papillary-mucinous neoplasm lung cancer osteosarcoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.