6LUO | pdb_00006luo

Structure of nurse shark beta-2-microglobulin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d6luob1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)
B	d6luob3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)
B	d6luob2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)
A	d6luoa1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)
A	d6luoa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)
A	d6luoa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Nurse shark (Ginglymostoma cirratum ) [TaxId: 7801 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8103100	3000071	SCOP2B (2022-06-29)
A	SCOP2 Family	C1 set domains-like	8103099	4000202	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Immunoglobulin (Ig) domain-like	8103100	3000071	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Omp85	e6luoB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
A	Omp85	e6luoA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Beta-2-microglobulin	-	antigen processing and presentation immune system process antigen processing and presentation of peptide antigen via MHC class I antigen processing and presentation of peptide antigen	MHC class I protein complex MHC protein complex cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR003597	Immunoglobulin C1-set	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, B	IPR007110	Immunoglobulin-like domain	Domain
A, B	IPR050160	Major Histocompatibility Complex/Immunoglobulin	Family
A, B	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.