6LSR

Cryo-EM structure of a pre-60S ribosomal subunit - state B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth 6]SCOP2B SuperfamilyPentein8098764 3000640 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8098870 3001911 SCOP2B (2022-06-29)
I [auth B]SCOP2B SuperfamilyTranslational proteins8078351 3000811 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyRibosomal protein L29e8053036 3002157 SCOP2B (2022-06-29)
K [auth D]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052831 3002143 SCOP2B (2022-06-29)
K [auth D]SCOP2B SuperfamilyRibosomal protein L48052832 3001146 SCOP2B (2022-06-29)
L [auth E]SCOP2B SuperfamilyL30e-like8077491 3001739 SCOP2B (2022-06-29)
M [auth F]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)
P [auth I]SCOP2B SuperfamilyRibosomal protein L68033688 3000724 SCOP2B (2022-06-29)
Q [auth K]SCOP2B SuperfamilyRibosomal protein L36e8053120 3002161 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8077123 3001045 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyRL5-like8073892 3001709 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyRibosomal protein L39e8095603 3001756 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyRibosomal protein L13e-like8053155 3002162 SCOP2B (2022-06-29)
Z [auth U]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8098812 3000210 SCOP2B (2022-06-29)
CA [auth X]SCOP2B SuperfamilyZn-binding ribosomal proteins8101551 3001320 SCOP2B (2022-06-29)
DA [auth Y]SCOP2B SuperfamilyRibosomal protein L228076704 3001078 SCOP2B (2022-06-29)
EA [auth Z]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095977 3001045 SCOP2B (2022-06-29)
IA [auth d]SCOP2B Superfamily60S Ribosomal protein L22e8053060 3002158 SCOP2B (2022-06-29)
JA [auth e]SCOP2B Superfamily50S Ribosomal protein L14-like8072050 3000433 SCOP2B (2022-06-29)
LA [auth g]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
MA [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
NA [auth i]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053050 3000334 SCOP2B (2022-06-29)
QA [auth r]SCOP2B SuperfamilyTranslational machinery components8052887 3000571 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyTranslational proteins8087455 3000811 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053099 3002160 SCOP2B (2022-06-29)
TA [auth v]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053100 3000334 SCOP2B (2022-06-29)
UA [auth w]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052923 3001378 SCOP2B (2022-06-29)
UA [auth w]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052922 3002152 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth 1]MnmE_helical_2nde6lsr11 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
D [auth 3]KOG2613_2nde6lsr32 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: KOG2613_2ndECOD (1.6)
D [auth 3]KOG2613_1ste6lsr33 A: beta barrelsX: SH3H: SH3T: SH3F: KOG2613_1stECOD (1.6)
D [auth 3]NMD3e6lsr31 A: a+b two layersX: 60S ribosomal export protein NMD3 a+b domain (From Topology)H: 60S ribosomal export protein NMD3 a+b domain (From Topology)T: 60S ribosomal export protein NMD3 a+b domainF: NMD3ECOD (1.6)
F [auth 6]eIF-6e6lsr61 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: eIF-6ECOD (1.6)
H [auth A]Ribosomal_L1_2nd_1e6lsrA2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: Ribosomal_L1_2nd_1ECOD (1.6)
H [auth A]Ribosomal_L1_1st_1e6lsrA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: Ribosomal_L1_1st_1ECOD (1.6)
I [auth B]Ribosomal_L3e6lsrB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
J [auth C]Ribosomal_L29ee6lsrC1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
K [auth D]Ribosomal_L4e6lsrD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
K [auth D]Ribos_L4_asso_Ce6lsrD2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
L [auth E]Ribosomal_L7Aee6lsrE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
M [auth F]Ribosomal_L34ee6lsrF1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
N [auth G]Ribosomal_L7Ae_1e6lsrG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
O [auth H]Ribosomal_L29_2e6lsrH1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
P [auth I]Ribosomal_L6_2e6lsrI2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
P [auth I]Ribosomal_L6e6lsrI1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
Q [auth K]Ribosomal_L36ee6lsrK1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
R [auth L]Ribosomal_L18e6lsrL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
S [auth M]Ribosomal_L37ee6lsrM1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
T [auth N]Ribosomal_L5_Ce6lsrN1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
U [auth O]Ribosomal_L38ee6lsrO1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
V [auth P]Ribosomal_L39e6lsrP1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
W [auth Q]Ribosomal_L13ee6lsrQ1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
X [auth S]Ribosomal_L14ee6lsrS1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
Y [auth T]Ribosomal_L31ee6lsrT1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
Z [auth U]Ribosomal_L15ee6lsrU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
AA [auth V]Ribosomal_L13e6lsrV1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BA [auth W]Ribosomal_L44e6lsrW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
CA [auth X]Ribosomal_L37aee6lsrX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
DA [auth Y]Ribosomal_L22e6lsrY1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
EA [auth Z]Ribosomal_L18e6lsrZ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
FA [auth a]Ribosomal_L19e_Ne6lsra1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
FA [auth a]Ribosomal_L19e_Ce6lsra2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
GA [auth b]Ribosomal_L18Ae6lsrb2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
IA [auth d]Ribosomal_L22ee6lsrd1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
JA [auth e]Ribosomal_L14e6lsre1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
KA [auth f]Ribosomal_L24ee6lsrf1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
LA [auth g]Ribosomal_L23_3e6lsrg1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
MA [auth h]Ribosomal_L26e6lsrh1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
NA [auth i]Ribosomal_L27ee6lsri1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
OA [auth l]Ribosomal_L28ee6lsrl1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
PA [auth m]Ribosomal_L2_1e6lsrm1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
PA [auth m]Ribosomal_L2_C_2e6lsrm2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
QA [auth r]Ribosomal_L5ee6lsrr1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
RA [auth t]Ribosomal_L32ee6lsrt1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
SA [auth u]Ribosomal_L35Aee6lsru1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
TA [auth v]Ribosomal_L6ee6lsrv1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
UA [auth w]Ribosomal_L30_1e6lsrw1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
VA [auth z]crvDNA_42Ke6lsrz1 A: alpha arraysX: HTHH: HTHT: wingedF: crvDNA_42KECOD (1.6)
VA [auth z]Peptidase_M24e6lsrz2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: Creatinase/aminopeptidase (From Topology)T: Creatinase/aminopeptidaseF: Peptidase_M24ECOD (1.6)
HA [auth c]Ribosomal_L21ee6lsrc1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 1]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
D [auth 3]PF21192NMD3 OB-fold domain (NMD3_OB)NMD3 OB-fold domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 whi ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 which adopts an OB-fold [1]. The OB of Nmd3 does not recognise 25S rRNA. Instead it interacts with two ribosomal proteins, eL42 and uL1 [1].
Domain
D [auth 3]PF04981NMD3 family (NMD3)NMD3 family- Family
D [auth 3]PF21193NMD3 SH3 domain (NMD_SH3)NMD3 SH3 domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 wh ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 which adopts an SH3-fold denoted as RBDII in [1]. The two short alpha-helices in RBDII participate in rRNA recognition [1].
Domain
F [auth 6]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
H [auth A]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
I [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
J [auth C]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
K [auth D]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
K [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
L [auth E]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
M [auth F]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
N [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
O [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
P [auth I]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
Q [auth K]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
R [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth M]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
T [auth N]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
T [auth N]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
U [auth O]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
V [auth P]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
W [auth Q]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
X [auth S]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Y [auth T]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
Z [auth U]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
AA [auth V]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth W]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
CA [auth X]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
DA [auth Y]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
EA [auth Z]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
FA [auth a]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
GA [auth b]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
IA [auth d]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
JA [auth e]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
KA [auth f]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
LA [auth g]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
LA [auth g]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
MA [auth h]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
MA [auth h]PF00467KOW motif (KOW)KOW motif- Family
NA [auth i]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
NA [auth i]PF00467KOW motif (KOW)KOW motif- Family
OA [auth l]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
PA [auth m]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PA [auth m]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
QA [auth r]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
QA [auth r]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
RA [auth t]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
SA [auth u]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
TA [auth v]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
TA [auth v]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
UA [auth w]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
UA [auth w]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
VA [auth z]PF00557Metallopeptidase family M24 (Peptidase_M24)Metallopeptidase family M24This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3].Domain
HA [auth c]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 1]Large subunit GTPase 1 homolog
C [auth 2]28S rRNA---
D [auth 3]60S ribosomal export protein NMD3
E [auth 5]5S rRNA---
F [auth 6]Eukaryotic translation initiation factor 6
G [auth 8]5.8S rRNA---
H [auth A]60S ribosomal protein L10a
I [auth B]60S ribosomal protein L3
J [auth C]60S ribosomal protein L29
K [auth D]60S ribosomal protein L4
L [auth E]60S ribosomal protein L30
M [auth F]60S ribosomal protein L34
N [auth G]60S ribosomal protein L7a
O [auth H]60S ribosomal protein L35
P [auth I]60S ribosomal protein L9
Q [auth K]60S ribosomal protein L36
R [auth L]60S ribosomal protein L27a
S [auth M]60S ribosomal protein L37
T [auth N]60S ribosomal protein L11
U [auth O]60S ribosomal protein L38
V [auth P]60S ribosomal protein L39
W [auth Q]60S ribosomal protein L13
X [auth S]60S ribosomal protein L14
Y [auth T]60S ribosomal protein L31
Z [auth U]60S ribosomal protein L15
AA [auth V]60S ribosomal protein L13a
BA [auth W]60S ribosomal protein L36a
CA [auth X]60S ribosomal protein L37a
DA [auth Y]60S ribosomal protein L17
EA [auth Z]60S ribosomal protein L18
FA [auth a]60S ribosomal protein L19
GA [auth b]60S ribosomal protein L18a
IA [auth d]60S ribosomal protein L22
JA [auth e]60S ribosomal protein L23
KA [auth f]60S ribosomal protein L24
LA [auth g]60S ribosomal protein L23a
MA [auth h]60S ribosomal protein L26
NA [auth i]60S ribosomal protein L27
OA [auth l]60S ribosomal protein L28
PA [auth m]60S ribosomal protein L8
QA [auth r]60S ribosomal protein L5
RA [auth t]60S ribosomal protein L32
SA [auth u]60S ribosomal protein L35a
TA [auth v]60S ribosomal protein L6
UA [auth w]60S ribosomal protein L7
VA [auth z]Proliferation-associated protein 2G4
A [auth 0]Zinc finger protein 622
HA [auth c]60S ribosomal protein L21

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 1]IPR043358Ras GTPase GNL1-likeFamily
B [auth 1]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
B [auth 1]IPR006073GTP binding domainDomain
B [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 3]IPR007064Nmd3, N-terminalDomain
D [auth 3]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
D [auth 3]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
D [auth 3]IPR039768Ribosomal export protein Nmd3Family
F [auth 6]IPR002769Translation initiation factor IF6Family
H [auth A]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
H [auth A]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
H [auth A]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
H [auth A]IPR002143Large ribosomal subunit protein uL1Family
H [auth A]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
I [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
I [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
I [auth B]IPR000597Large ribosomal subunit protein uL3Family
I [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
J [auth C]IPR002673Large ribosomal subunit protein eL29Family
K [auth D]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
K [auth D]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
K [auth D]IPR002136Large ribosomal subunit protein uL4Family
K [auth D]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
K [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth E]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
L [auth E]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth E]IPR000231Large ribosomal subunit protein eL30Family
L [auth E]IPR039109Large ribosomal subunit protein eL30-likeFamily
L [auth E]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth F]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
M [auth F]IPR008195Large ribosomal subunit protein eL34Family
N [auth G]IPR001921Large ribosomal subunit protein eL8Family
N [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
N [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
O [auth H]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
O [auth H]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
O [auth H]IPR001854Large ribosomal subunit protein uL29Family
O [auth H]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
P [auth I]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
P [auth I]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
P [auth I]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
P [auth I]IPR000702Large ribosomal subunit protein uL6-likeFamily
Q [auth K]IPR000509Large ribosomal subunit protein eL36Family
Q [auth K]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth L]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
R [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
R [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
R [auth L]IPR030878Large ribosomal subunit protein uL15Family
R [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth M]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
S [auth M]IPR001569Large ribosomal subunit protein eL37Family
S [auth M]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
S [auth M]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth N]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
T [auth N]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
T [auth N]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
T [auth N]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
T [auth N]IPR002132Large ribosomal subunit protein uL5Family
U [auth O]IPR002675Large ribosomal subunit protein eL38Family
U [auth O]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
V [auth P]IPR000077Large ribosomal subunit protein eL39Family
V [auth P]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
V [auth P]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
W [auth Q]IPR001380Large ribosomal subunit protein eL13Family
W [auth Q]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
X [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth S]IPR039660Large ribosomal subunit protein eL14Family
X [auth S]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
X [auth S]IPR002784Large ribosomal subunit protein eL14 domainDomain
Y [auth T]IPR000054Large ribosomal subunit protein eL31Family
Y [auth T]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
Y [auth T]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
Z [auth U]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
Z [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Z [auth U]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
Z [auth U]IPR000439Large ribosomal subunit protein eL15Family
AA [auth V]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AA [auth V]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
AA [auth V]IPR005822Large ribosomal subunit protein uL13Family
AA [auth V]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
BA [auth W]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth W]IPR000552Large ribosomal subunit protein eL42Family
CA [auth X]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
CA [auth X]IPR002674Large ribosomal subunit protein eL43Family
CA [auth X]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth Y]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
DA [auth Y]IPR001063Large ribosomal subunit protein uL22Family
DA [auth Y]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
DA [auth Y]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
EA [auth Z]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
EA [auth Z]IPR000039Large ribosomal subunit protein eL18Family
EA [auth Z]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth Z]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth a]IPR039547Large ribosomal subunit protein eL19Family
FA [auth a]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
FA [auth a]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
FA [auth a]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
FA [auth a]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
FA [auth a]IPR000196Large ribosomal subunit protein eL19 domainDomain
GA [auth b]IPR028877Large ribosomal subunit protein eL20Family
GA [auth b]IPR023573Large ribosomal subunit protein eL20 domainDomain
GA [auth b]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
IA [auth d]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
IA [auth d]IPR002671Large ribosomal subunit protein eL22Family
JA [auth e]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
JA [auth e]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
JA [auth e]IPR000218Large ribosomal subunit protein uL14Family
KA [auth f]IPR011017TRASH domainDomain
KA [auth f]IPR000988Large ribosomal subunit protein eL24-relatedFamily
KA [auth f]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
KA [auth f]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
LA [auth g]IPR019985Large ribosomal subunit protein uL23Family
LA [auth g]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
LA [auth g]IPR013025Large ribosomal subunit protein uL23-likeFamily
LA [auth g]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth g]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth g]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
MA [auth h]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth h]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
MA [auth h]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
MA [auth h]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth h]IPR005824KOWDomain
MA [auth h]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
NA [auth i]IPR001141Large ribosomal subunit protein eL27Family
NA [auth i]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
NA [auth i]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth i]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
NA [auth i]IPR005824KOWDomain
NA [auth i]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
OA [auth l]IPR029004Ribosomal eL28/Mak16Domain
OA [auth l]IPR002672Large ribosomal subunit protein eL28Family
PA [auth m]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
PA [auth m]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
PA [auth m]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth m]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
PA [auth m]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
PA [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PA [auth m]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
PA [auth m]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
PA [auth m]IPR002171Large ribosomal subunit protein uL2Family
QA [auth r]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
QA [auth r]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
RA [auth t]IPR001515Large ribosomal subunit protein eL32Family
RA [auth t]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
RA [auth t]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
SA [auth u]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
SA [auth u]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
SA [auth u]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
SA [auth u]IPR001780Large ribosomal subunit protein eL33Family
TA [auth v]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
TA [auth v]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
TA [auth v]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
TA [auth v]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
TA [auth v]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth v]IPR000915Large ribosomal subunit protein eL6Family
UA [auth w]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
UA [auth w]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
UA [auth w]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UA [auth w]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
UA [auth w]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
UA [auth w]IPR039699Large ribosomal subunit protein uL30Family
UA [auth w]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
VA [auth z]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
VA [auth z]IPR047113Proliferation-associated protein 2G4/ARX1Family
VA [auth z]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
VA [auth z]IPR018349Peptidase M24A, methionine aminopeptidase, subfamily 2, binding siteBinding Site
VA [auth z]IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
VA [auth z]IPR004545PA2G4 familyFamily
VA [auth z]IPR000994Peptidase M24Domain
A [auth 0]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
A [auth 0]IPR013087Zinc finger C2H2-typeDomain
A [auth 0]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
A [auth 0]IPR040025Zinc finger protein 622/Rei1/Reh1Family
A [auth 0]IPR041661ZN622/Rei1/Reh1, zinc finger C2H2-typeDomain
A [auth 0]IPR022755Zinc finger, double-stranded RNA bindingDomain
HA [auth c]IPR001147Large ribosomal subunit protein eL21Family
HA [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth c]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
HA [auth c]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth 1]PharosQ9H089
D [auth 3]PharosQ96D46
F [auth 6]PharosP56537
H [auth A]PharosP62906
I [auth B]PharosP39023
K [auth D]PharosP36578
L [auth E]PharosP62888
M [auth F]PharosP49207
N [auth G]PharosP62424
O [auth H]PharosP42766
P [auth I]PharosP32969
Q [auth K]PharosQ9Y3U8
R [auth L]PharosP46776
S [auth M]PharosP61927
T [auth N]PharosP62913
U [auth O]PharosP63173
W [auth Q]PharosP26373
X [auth S]PharosP50914
Y [auth T]PharosP62899
Z [auth U]PharosP61313
AA [auth V]PharosP40429
BA [auth W]PharosP83881
CA [auth X]PharosP61513
DA [auth Y]PharosP18621
EA [auth Z]PharosQ07020
FA [auth a]PharosP84098
IA [auth d]PharosP35268
JA [auth e]PharosP62829
KA [auth f]PharosP83731
LA [auth g]PharosP62750
MA [auth h]PharosP61254
NA [auth i]PharosP61353
OA [auth l]PharosP46779
QA [auth r]PharosP46777
RA [auth t]PharosP62910
SA [auth u]PharosP18077
TA [auth v]PharosQ02878
UA [auth w]PharosP18124
VA [auth z]PharosQ9UQ80
A [auth 0]PharosQ969S3
HA [auth c]PharosP46778