6LQQ | pdb_00006lqq

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth SH]SCOP2B SuperfamilyGS N-terminal domain-like 8053173 3000408 SCOP2B (2022-06-29)
F [auth SG]SCOP2B SuperfamilyRibosomal protein S7 8065993 3000799 SCOP2B (2022-06-29)
EB [auth RH]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
DB [auth RG]SCOP2B Superfamilyalpha/beta knot 8037153 3001122 SCOP2B (2022-06-29)
CB [auth RF]SCOP2B SuperfamilyRRP7 C-terminal domain-like 8053722 3002219 SCOP2B (2022-06-29)
CB [auth RF]SCOP2B SuperfamilyRNA-binding domain, RBD 8053724 3000110 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053728 3000941 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053725 3000129 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8053727 3000941 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyNucleotidyltransferase-like 8053726 3000129 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053730 3001147 SCOP2B (2022-06-29)
BB [auth RE]SCOP2B SuperfamilyPAP/Archaeal CCA-adding enzyme C-terminal domain-like 8053729 3001147 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052760 3000334 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyNucleic acid-binding proteins 8052759 3000135 SCOP2B (2022-06-29)
E [auth SF]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052758 3001473 SCOP2B (2022-06-29)
D [auth SC]SCOP2B SuperfamilyRibosomal S3Ae-like 8053211 3002166 SCOP2B (2022-06-29)
JA [auth B3]SCOP2B SuperfamilyUTPB complex component-like 8061270 3002330 SCOP2B (2022-06-29)
Z [auth 3H]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
Y [auth 3G]SCOP2B SuperfamilyL30e-like 8033484 3001739 SCOP2B (2022-06-29)
U [auth 3C]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
T [auth 3B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8063662 3000118 SCOP2B (2022-06-29)
S [auth Sd]SCOP2B SuperfamilyNucleic acid-binding proteins 8063430 3000135 SCOP2B (2022-06-29)
N [auth SR]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8103366 3000100 SCOP2B (2022-06-29)
M [auth SP]SCOP2B SuperfamilyTranslational machinery components 8095805 3000571 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052974 3001284 SCOP2B (2022-06-29)
L [auth SO]SCOP2B SuperfamilyHomeodomain-like 8052973 3000001 SCOP2B (2022-06-29)
K [auth SM]SCOP2B SuperfamilyNucleic acid-binding proteins 8052738 3000135 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth SJ]Ribosomal_S8ee6lqqSJ1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
H [auth SI]Ribosomal_S7e_Ne6lqqSI1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
H [auth SI]Ribosomal_S7e_C_2e6lqqSI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_2ECOD (1.6)
G [auth SH]Ribosomal_S6ee6lqqSH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
OB [auth RT]KH_1e6lqqRT1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KH_1ECOD (1.6)
OB [auth RT]KOG3273e6lqqRT2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: KOG3273ECOD (1.6)
NB [auth RS]Bystine6lqqRS1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: BystinECOD (1.6)
F [auth SG]Ribosomal_S7_1e6lqqSG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
IB [auth RM]tRNA_bind_2e6lqqRM4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: tRNA_bind_2ECOD (1.6)
IB [auth RM]GNAT_acetyltr_2e6lqqRM1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: GNAT_acetyltr_2ECOD (1.6)
IB [auth RM]DUF1726e6lqqRM3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DUF1726ECOD (1.6)
IB [auth RM]Helicase_RecDe6lqqRM2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_RecDECOD (1.6)
HB [auth RL]tRNA_bind_2e6lqqRL4 A: alpha arraysX: HTHH: HTHT: tri-helicalF: tRNA_bind_2ECOD (1.6)
HB [auth RL]GNAT_acetyltr_2e6lqqRL1 A: a+b three layersX: Nat/IvyH: Acyl-CoA N-acyltransferases (Nat) (From Topology)T: Acyl-CoA N-acyltransferases (Nat)F: GNAT_acetyltr_2ECOD (1.6)
HB [auth RL]DUF1726e6lqqRL3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DUF1726ECOD (1.6)
HB [auth RL]Helicase_RecDe6lqqRL2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_RecDECOD (1.6)
GB [auth RK]RTCe6lqqRK2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: RTCECOD (1.6)
GB [auth RK]RTC_inserte6lqqRK1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: RTC_insertECOD (1.6)
EB [auth RH]EMG1e6lqqRH1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: EMG1ECOD (1.6)
DB [auth RG]EMG1e6lqqRG1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: EMG1ECOD (1.6)
CB [auth RF]KOG4008e6lqqRF1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: KOG4008ECOD (1.6)
BB [auth RE]Nrap_D2e6lqqRE5 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Nrap_D2ECOD (1.6)
BB [auth RE]Nrap_D5e6lqqRE1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: PAP/OAS1 substrate-binding domainF: Nrap_D5ECOD (1.6)
BB [auth RE]Nrap_D3e6lqqRE3 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: Nrap_D3ECOD (1.6)
BB [auth RE]Nrap_D6e6lqqRE6 A: a+b two layersX: Alpha-beta plaitsH: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology)T: PAP/Archaeal CCA-adding enzyme, C-terminal domainF: Nrap_D6ECOD (1.6)
BB [auth RE]Nrape6lqqRE2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: NrapECOD (1.6)
BB [auth RE]Nrap_D4e6lqqRE4 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: Nrap_D4ECOD (1.6)
AB [auth RD]Sufe6lqqRD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SufECOD (1.6)
E [auth SF]Ribosomal_S4ee6lqqSF2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
E [auth SF]40S_S4_Ce6lqqSF1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
E [auth SF]RS4NTe6lqqSF3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
XA [auth RA]ANAPC4_WD40_9e6lqqRA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_9ECOD (1.6)
RA [auth 5F]S4e6lqq5F1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
D [auth SC]Ribosomal_S3Ae_Ne6lqqSC2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
D [auth SC]Ribosomal_S3Ae_Ce6lqqSC1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
JA [auth B3]ANAPC4_WD40_9e6lqqB31 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_9ECOD (1.6)
JA [auth B3]ANAPC4_WD40_6e6lqqB32 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
JA [auth B3]Utp13e6lqqB33 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp13ECOD (1.6)
IA [auth B2]ANAPC4_WD40_10e6lqqB21 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_10ECOD (1.6)
IA [auth B2]ANAPC4_WD40_13e6lqqB22 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_13ECOD (1.6)
IA [auth B2]Utp12e6lqqB23 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp12ECOD (1.6)
HA [auth B1]ANAPC4_WD40_1e6lqqB12 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_1ECOD (1.6)
HA [auth B1]ANAPC4_WD40_8e6lqqB13 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_8ECOD (1.6)
HA [auth B1]Utp12e6lqqB11 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: Utp12ECOD (1.6)
FA [auth AF]ANAPC4_WD40_7e6lqqAF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: ANAPC4_WD40_7ECOD (1.6)
FA [auth AF]F_UNCLASSIFIEDe6lqqAF2 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: F_UNCLASSIFIEDECOD (1.6)
DA [auth A9]F_UNCLASSIFIEDe6lqqA91 A: alpha superhelicesX: Repetitive alpha hairpinsH: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 (From Topology)T: C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13F: F_UNCLASSIFIEDECOD (1.6)
AA [auth A4]ANAPC4_WD40_2e6lqqA42 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_2ECOD (1.6)
AA [auth A4]ANAPC4_WD40_6e6lqqA41 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_6ECOD (1.6)
Z [auth 3H]Ribosomal_L7Ae_1e6lqq3H1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
Y [auth 3G]Ribosomal_L7Ae_1e6lqq3G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
X [auth 3F]ANAPC4_WD40_8e6lqq3F1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_8ECOD (1.6)
V [auth 3D]Nop_Ce6lqq3D1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: Nop C-terminal domainF: Nop_CECOD (1.6)
V [auth 3D]Nop_Ne6lqq3D2 A: alpha complex topologyX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: Nop_NECOD (1.6)
V [auth 3D]NOP5NTe6lqq3D3 A: mixed a+b and a/bX: Nop N-terminal domain (From Topology)H: Nop N-terminal domain (From Topology)T: Nop N-terminal domainF: NOP5NTECOD (1.6)
U [auth 3C]Fibrillarine6lqq3C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
T [auth 3B]Fibrillarine6lqq3B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: FibrillarinECOD (1.6)
S [auth Sd]Ribosomal_S28ee6lqqSd1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
R [auth Sc]Ribosomal_S27ee6lqqSc1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
Q [auth SZ]Ribosomal_S24ee6lqqSZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
P [auth SY]Ribosom_S12_S23e6lqqSY1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
O [auth SX]Ribosomal_S8_N_1e6lqqSX1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
O [auth SX]Ribosomal_S8_C_1e6lqqSX2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
N [auth SR]Ribosomal_S9e6lqqSR1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
M [auth SP]Ribosomal_S11e6lqqSP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
L [auth SO]Ribosomal_S13_Ne6lqqSO1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
L [auth SO]Ribosomal_S15_2e6lqqSO2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
K [auth SM]Ribosomal_S17_1e6lqqSM1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
J [auth SK]S4e6lqqSK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth SJ]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
G [auth SH]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
LB [auth RP]PF07539U3 small nucleolar RNA-associated protein 20, N-terminal (UTP20_N)U3 small nucleolar RNA-associated protein 20, N-terminal- Repeat
F [auth SG]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
KB [auth RO]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
JB [auth RN]PF04147Nop14-like family (Nop14)Nop14-like family- Family
HB [auth RL],
IB [auth RM]
PF13725Possible tRNA binding domain (tRNA_bind_2)Possible tRNA binding domain- Family
HB [auth RL],
IB [auth RM]
PF08351tRNA(Met) cytidine acetyltransferase TmcA, N-terminal (TmcA_N)tRNA(Met) cytidine acetyltransferase TmcA, N-terminalThis domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acet ...This domain of unknown function is often found at the N-terminal of the bacterial tRNA(Met) cytidine acetyltransferase TmcA. TmcA catalyses the formation of N(4)-acetylcytidine (ac4C) at the wobble position of tRNA(Met) by using acetyl-CoA as an acetyl donor and either ATP or GTP [1,2,5]. This modification is thought to ensure precise recognition of the AUG codon by strengthening C-G base-pair interaction and also prevent misrecognition of the near cognate AUA codon [1]. This domain is also found in mammalian N-acetyltransferase 10 (NAT10) and fungal protein Kre33. Kre33 and NAT10 are RNA cytosine acetyltransferases with specificity toward both 18S rRNA and tRNAs and contain additional putative nuclear and nucleolar localisation signals (NLS and NoLS respectively) [3,4,5].
Domain
HB [auth RL],
IB [auth RM]
PF13718GNAT acetyltransferase 2 (GNAT_acetyltr_2)GNAT acetyltransferase 2- Family
HB [auth RL],
IB [auth RM]
PF05127RNA cytidine acetyltransferase NAT10/TcmA, helicase domain (NAT10_TcmA_helicase)RNA cytidine acetyltransferase NAT10/TcmA, helicase domainThis domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 ca ...This domain contains a P-loop (Walker A) motif, suggesting that it has ATPase activity, and a Walker B motif. It si found in RNA cytidine acetyltransferase NAT10 from eukaryotes and tRNA(Met) cytidine acetyltransferase TcmA from prokaryotes. NAT10 catalyses the formation of N4-acetylcytidine (ac4C) modification on mRNAs, 18S rRNA and tRNAs [1-4]. In tRNA(Met) cytidine acetyltransferase (TmcA) it may function as an RNA helicase motor (driven by ATP hydrolysis) which delivers the wobble base to the active centre of the GCN5-related N-acetyltransferase (GNAT) domain [1].
Domain
GB [auth RK]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
GB [auth RK]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
FB [auth RJ]PF08142AARP2CN (NUC121) domain (AARP2CN)AARP2CN (NUC121) domainThis domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU [1]. Domain
FB [auth RJ]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
DB [auth RG],
EB [auth RH]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
CB [auth RF]PF17799Rrp7 RRM-like N-terminal domain (RRM_Rrp7)Rrp7 RRM-like N-terminal domainThis domain corresponds to the N-terminal RNA-binding domain found in the Rrp7 protein. It has an RRM-like fold with a circular permutation [1]. Domain
CB [auth RF]PF12923Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain (RRP7)Ribosomal RNA-processing protein 7 (RRP7) C-terminal domainRRP7 is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly [1]. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [1-2]. Domain
BB [auth RE]PF03813Nrap protein domain 1 (Nrap)Nrap protein domain 1Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1]. This domain has a nucleotidyltransferase structure.
Domain
BB [auth RE]PF17403Nrap protein PAP/OAS-like domain (Nrap_D2)Nrap protein PAP/OAS-like domainMembers of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
BB [auth RE]PF17406Nrap protein PAP/OAS1-like domain 5 (Nrap_D5)Nrap protein PAP/OAS1-like domain 5Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
BB [auth RE]PF17407Nrap protein domain 6 (Nrap_D6)Nrap protein domain 6Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
BB [auth RE]PF17404Nrap protein domain 3 (Nrap_D3)Nrap protein domain 3Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
BB [auth RE]PF17405Nrap protein nucleotidyltransferase domain 4 (Nrap_D4)Nrap protein nucleotidyltransferase domain 4Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a ...Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localised in the nucleolus [1]. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [1].
Domain
AB [auth RD]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. Domain
AB [auth RD]PF05843Suppressor of forked protein (Suf) (Suf)Suppressor of forked protein (Suf)- Repeat
ZA [auth RC]PF17903Krr1 KH1 domain (KH_KRR1_1st)Krr1 KH1 domainThis entry represents the first KH domain in the KRR1 protein [1]. Krr1 is a ribosomal assembly factor. The KH1 domain is a divergent KH domain that lacks the RNA-binding GXXG motif and is involved in binding another assembly factor, Kri1 [1]. Domain
ZA [auth RC]PF21800KRR1 small subunit processome component, second KH domain (KH_KRR1_2nd)KRR1 small subunit processome component, second KH domainThis is the second K homology domain (KH2) found in KRR1 small subunit processome component from the fungus Chaetomium thermophilum and similar eukaryotic sequences. Domain
E [auth SF]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth SF]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth SF]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth SF]PF00467KOW motif (KOW)KOW motif- Family
WA [auth 5K]PF04900Fcf1 (Fcf1)Fcf1Fcf1 is a nucleolar protein involved in pre-rRNA processing [1]. Depletion of yeast Fcf1 and Fcf2 leads to a decrease in synthesis of the 18S rRNA and results in a deficit in 40S ribosomal subunits [1]. Domain
UA [auth 5I]PF04158Sof1-like domain (Sof1)Sof1-like domain- Family
UA [auth 5I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
SA [auth 5G]PF04427Brix domain (Brix)Brix domainDomain
RA [auth 5F]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
RA [auth 5F]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PA [auth 5D]PF03998Utp11 protein (Utp11)Utp11 protein- Family
D [auth SC]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
D [auth SC]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
OA [auth 5C]PF08149BING4CT (NUC141) domain (BING4CT)BING4CT (NUC141) domain- Repeat
OA [auth 5C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth B6]PF08640U3 small nucleolar RNA-associated protein 6 (U3_assoc_6)U3 small nucleolar RNA-associated protein 6- Repeat
MA [auth B6]PF05843Suppressor of forked protein (Suf) (Suf)Suppressor of forked protein (Suf)- Repeat
LA [auth BE]PF04192Utp21 specific WD40 associated putative domain (Utp21)Utp21 specific WD40 associated putative domainUtp21 is a subunit of U3 snoRNP, which is essential for synthesis of 18S rRNA. Domain
LA [auth BE]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KA [auth B8]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth B3]PF08625Utp13 specific WD40 associated domain (Utp13)Utp13 specific WD40 associated domainUtp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable o ...Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome [1]. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end [1].
Domain
IA [auth B2]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
IA [auth B2]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HA [auth B1]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
HA [auth B1]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
GA [auth AG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
FA [auth AF]PF09384UTP15 C terminal (UTP15_C)UTP15 C terminal- Family
FA [auth AF]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth AE]PF08146BP28CT (NUC211) domain (BP28CT)BP28CT (NUC211) domainThis C terminal domain is found in BAP28-like nucleolar proteins [1]. Domain
EA [auth AE]PF12397U3 small nucleolar RNA-associated protein 10 (U3snoRNP10)U3 small nucleolar RNA-associated protein 10- Family
CA [auth A8]PF22542Utp8, C-terminal (Utp8_C)Utp8, C-terminalThis domain is found at the C-terminal end of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It is ...This domain is found at the C-terminal end of U3 small nucleolar RNA-associated protein 8 from Saccharomyces cerevisiae (Utp8) and similar proteins from fungi. Utp8 is an essential component of the nuclear tRNA export machinery in S.cerevisiae. It is a tRNA binding protein that act at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [1]. This domain shows an all-alpha structure.
Domain
BA [auth A5]PF04003Dip2/Utp12 Family (Utp12)Dip2/Utp12 Family- Family
AA [auth A4]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth 3G],
Z [auth 3H]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth 3F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth 3E]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
W [auth 3E]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
V [auth 3D]PF08156NOP5NT (NUC127) domain (NOP5NT)NOP5NT (NUC127) domainThis N terminal domain is found in RNA-binding proteins of the NOP5 family [1]. Domain
V [auth 3D]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
T [auth 3B],
U [auth 3C]
PF01269Fibrillarin (Fibrillarin)FibrillarinDomain
Q [auth SZ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
O [auth SX]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
N [auth SR]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth SP]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
L [auth SO]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
K [auth SM]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth SM]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
J [auth SK]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth SJ]40S ribosomal protein S8-A
H [auth SI]40S ribosomal protein S7-A
G [auth SH]40S ribosomal protein S6-A
RB [auth X1]Unassigned helices---
QB [auth RY]Protein BFR2-
PB [auth RV]Protein FAF1-
OB [auth RT]Pno1---
NB [auth RS]Essential nuclear protein 1
MB [auth RQ]U3 small nucleolar RNA-associated protein 14
LB [auth RP]U3 small nucleolar RNA-associated protein 20
F [auth SG]40S ribosomal protein S5
KB [auth RO]Nucleolar complex protein 4-
JB [auth RN]Nucleolar complex protein 14
HB [auth RL],
IB [auth RM]
RNA cytidine acetyltransferase
GB [auth RK]RNA 3'-terminal phosphate cyclase-like protein
FB [auth RJ]Ribosome biogenesis protein BMS1
DB [auth RG],
EB [auth RH]
Ribosomal RNA small subunit methyltransferase NEP1
CB [auth RF]Ribosomal RNA-processing protein 7
BB [auth RE]U3 small nucleolar RNA-associated protein 22
AB [auth RD]rRNA biogenesis protein RRP5
ZA [auth RC]KRR1 small subunit processome component
E [auth SF]40S ribosomal protein S4-A
YA [auth RB]U3 small nucleolar ribonucleoprotein protein LCP5-
XA [auth RA]Ribosome biogenesis protein ENP2-
WA [auth 5K]rRNA-processing protein FCF1
VA [auth 5J]rRNA-processing protein FCF2-
UA [auth 5I]Protein SOF1
TA [auth 5H]Something about silencing protein 10
SA [auth 5G]U3 small nucleolar ribonucleoprotein protein IMP4
RA [auth 5F]U3 small nucleolar ribonucleoprotein protein IMP3
QA [auth 5E]U3 small nucleolar RNA-associated protein MPP10
PA [auth 5D]U3 small nucleolar RNA-associated protein 11-
D [auth SC]40S ribosomal protein S1-A
OA [auth 5C]U3 small nucleolar RNA-associated protein 7-
NA [auth 5B]Bud site selection protein 21
MA [auth B6]U3 small nucleolar RNA-associated protein 6
LA [auth BE]U3 small nucleolar RNA-associated protein 21-
KA [auth B8]U3 small nucleolar RNA-associated protein 18-
JA [auth B3]U3 small nucleolar RNA-associated protein 13
IA [auth B2]U3 small nucleolar RNA-associated protein 12
HA [auth B1]Periodic tryptophan protein 2
GA [auth AG]NET1-associated nuclear protein 1
FA [auth AF]U3 small nucleolar RNA-associated protein 15
C [auth SA]18S pre-rRNA---
EA [auth AE]U3 small nucleolar RNA-associated protein 10
DA [auth A9]U3 small nucleolar RNA-associated protein 9
CA [auth A8]U3 small nucleolar RNA-associated protein 8
BA [auth A5]U3 small nucleolar RNA-associated protein 5-
AA [auth A4]U3 small nucleolar RNA-associated protein 4-
Y [auth 3G],
Z [auth 3H]
13 kDa ribonucleoprotein-associated protein
X [auth 3F]Ribosomal RNA-processing protein 9
W [auth 3E]Nucleolar protein 58
V [auth 3D]Nucleolar protein 56
T [auth 3B],
U [auth 3C]
rRNA 2'-O-methyltransferase fibrillarin
B [auth 5A]5' ETS---
S [auth Sd]40S ribosomal protein S28-A
R [auth Sc]40S ribosomal protein S27-A
Q [auth SZ]40S ribosomal protein S24-A
P [auth SY]40S ribosomal protein S23-A
O [auth SX]40S ribosomal protein S22-B
N [auth SR]40S ribosomal protein S16-A
M [auth SP]40S ribosomal protein S14-A
L [auth SO]40S ribosomal protein S13
K [auth SM]40S ribosomal protein S11-A
J [auth SK]40S ribosomal protein S9-A
A [auth 3A]U3 snoRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth SJ]IPR001047Small ribosomal subunit protein eS8Family
I [auth SJ]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily
I [auth SJ]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth SJ]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
H [auth SI]IPR000554Small ribosomal subunit protein eS7Family
H [auth SI]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
G [auth SH]IPR014401Small ribosomal subunit protein eS6-likeFamily
G [auth SH]IPR001377Small ribosomal subunit protein eS6Family
G [auth SH]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
QB [auth RY]IPR012617Apoptosis-antagonizing transcription factor, C-terminalDomain
QB [auth RY]IPR025160AATF leucine zipper-containing domainDomain
QB [auth RY]IPR039223Protein AATF/Bfr2Family
PB [auth RV]IPR053030Ribosomal biogenesis protein FAF1-likeFamily
NB [auth RS]IPR007955BystinFamily
MB [auth RQ]IPR006709Small-subunit processome, Utp14Family
LB [auth RP]IPR046523U3 small nucleolar RNA-associated protein 20 domainDomain
LB [auth RP]IPR016024Armadillo-type foldHomologous Superfamily
LB [auth RP]IPR011430U3 small nucleolar RNA-associated protein 20, N-terminalDomain
LB [auth RP]IPR011989Armadillo-like helicalHomologous Superfamily
LB [auth RP]IPR052575Small subunit processome component 20Family
F [auth SG]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth SG]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth SG]IPR000235Small ribosomal subunit protein uS7Family
F [auth SG]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth SG]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
KB [auth RO]IPR027193Nucleolar complex protein 4Family
KB [auth RO]IPR005612CCAAT-binding factorDomain
JB [auth RN]IPR007276Nucleolar protein 14Family
HB [auth RL],
IB [auth RM]
IPR007807TcmA/NAT10, helicase domainDomain
HB [auth RL],
IB [auth RM]
IPR027992Possible tRNA binding domainDomain
HB [auth RL],
IB [auth RM]
IPR013562TmcA/NAT10, N-terminalDomain
HB [auth RL],
IB [auth RM]
IPR032672TmcA/NAT10/Kre33Family
HB [auth RL],
IB [auth RM]
IPR033688RNA cytidine acetyltransferase NAT10Family
HB [auth RL],
IB [auth RM]
IPR000182GNAT domainDomain
HB [auth RL],
IB [auth RM]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GB [auth RK]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
GB [auth RK]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
GB [auth RK]IPR000228RNA 3'-terminal phosphate cyclaseFamily
GB [auth RK]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
GB [auth RK]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
GB [auth RK]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
GB [auth RK]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
GB [auth RK]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
FB [auth RJ]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
FB [auth RJ]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
FB [auth RJ]IPR003959ATPase, AAA-type, coreDomain
FB [auth RJ]IPR012948AARP2CNDomain
FB [auth RJ]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FB [auth RJ]IPR030387Bms1/Tsr1-type G domainDomain
FB [auth RJ]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
DB [auth RG],
EB [auth RH]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
DB [auth RG],
EB [auth RH]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
DB [auth RG],
EB [auth RH]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
CB [auth RF]IPR040446Ribosomal RNA-processing protein 7Family
CB [auth RF]IPR040447Rrp7, RRM-like N-terminal domainDomain
CB [auth RF]IPR024326Ribosomal RNA-processing protein 7, C-terminal domainDomain
BB [auth RE]IPR035367Nrap protein, domain 2Domain
BB [auth RE]IPR035368Nrap protein, domain 3Domain
BB [auth RE]IPR035370Nrap protein, domain 5Domain
BB [auth RE]IPR005554NOL6/Upt22Family
BB [auth RE]IPR035369Nrap protein, domain 4Domain
BB [auth RE]IPR035082Nrap protein domain 1Domain
BB [auth RE]IPR035371Nrap protein, domain 6Domain
AB [auth RD]IPR048059rRNA biogenesis protein RRP5, S1 domain, first repeatDomain
AB [auth RD]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
AB [auth RD]IPR003029S1 domainDomain
AB [auth RD]IPR048058rRNA biogenesis protein RRP5, S1 domain, eleventh repeatDomain
AB [auth RD]IPR003107HAT (Half-A-TPR) repeatRepeat
AB [auth RD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AB [auth RD]IPR045209rRNA biogenesis protein Rrp5Family
ZA [auth RC]IPR041174KRR1 small subunit processome component, first KH domainDomain
ZA [auth RC]IPR024166Ribosomal RNA assembly KRR1Family
ZA [auth RC]IPR004087K Homology domainDomain
ZA [auth RC]IPR048550KRR1 small subunit processome component, first KH domain, eukaryotesDomain
ZA [auth RC]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
ZA [auth RC]IPR048548KRR1 small subunit processome component, second KH domainDomain
ZA [auth RC]IPR048549KRR1 small subunit processome component, second KH domain, eukaryotesDomain
E [auth SF]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth SF]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth SF]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth SF]IPR002942RNA-binding S4 domainDomain
E [auth SF]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth SF]IPR000876Small ribosomal subunit protein eS4Family
E [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth SF]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth SF]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth SF]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth SF]IPR005824KOWDomain
YA [auth RB]IPR007146Sas10/Utp3/C1DFamily
XA [auth RA]IPR001680WD40 repeatRepeat
XA [auth RA]IPR056550Nucleolar protein 10-like, second domainDomain
XA [auth RA]IPR040382Nucleolar protein 10/Enp2Family
XA [auth RA]IPR012580NUC153Domain
XA [auth RA]IPR056551Nucleolar protein 10-like, N-terminal domainDomain
XA [auth RA]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
XA [auth RA]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
WA [auth 5K]IPR002716PIN domainDomain
WA [auth 5K]IPR006984Fcf1/UTP23Family
WA [auth 5K]IPR029060PIN-like domain superfamilyHomologous Superfamily
WA [auth 5K]IPR037503rRNA-processing protein Fcf1, PIN domainDomain
VA [auth 5J]IPR039883Fcf2/DNTTIP2Family
VA [auth 5J]IPR014810Fcf2 pre-rRNA processing, C-terminalDomain
UA [auth 5I]IPR051733WD repeat-containing DCAF13/WDSOF1Family
UA [auth 5I]IPR007287Sof1-like proteinDomain
UA [auth 5I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
UA [auth 5I]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
UA [auth 5I]IPR001680WD40 repeatRepeat
UA [auth 5I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
TA [auth 5H]IPR018972Sas10 C-terminal domainDomain
TA [auth 5H]IPR007146Sas10/Utp3/C1DFamily
SA [auth 5G]IPR044281U3 snoRNP protein/Ribosome production factor 1Family
SA [auth 5G]IPR007109Brix domainDomain
RA [auth 5F]IPR002942RNA-binding S4 domainDomain
RA [auth 5F]IPR022801Small ribosomal subunit protein uS4Family
RA [auth 5F]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
RA [auth 5F]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
QA [auth 5E]IPR012173U3 small nucleolar ribonucleoprotein complex, subunit Mpp10Family
PA [auth 5D]IPR007144Small-subunit processome, Utp11Family
D [auth SC]IPR001593Small ribosomal subunit protein eS1Family
D [auth SC]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
D [auth SC]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
OA [auth 5C]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth 5C]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR012952BING4, C-terminal domainDomain
OA [auth 5C]IPR001680WD40 repeatRepeat
OA [auth 5C]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth 5C]IPR040315WD repeat-containing protein WDR46/Utp7Family
NA [auth 5B]IPR013268U3 small nucleolar RNA-associated protein 16Family
MA [auth B6]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth B6]IPR055347U3 small nucleolar RNA-associated protein 6, N-terminalDomain
MA [auth B6]IPR003107HAT (Half-A-TPR) repeatRepeat
MA [auth B6]IPR013949U3 small nucleolar RNA-associated protein 6Family
LA [auth BE]IPR019775WD40 repeat, conserved siteConserved Site
LA [auth BE]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
LA [auth BE]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
LA [auth BE]IPR007319WDR36/Utp21, C-terminal domainDomain
LA [auth BE]IPR001680WD40 repeatRepeat
LA [auth BE]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR001680WD40 repeatRepeat
KA [auth B8]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B8]IPR045161U3 small nucleolar RNA-associated protein 18Family
JA [auth B3]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth B3]IPR013934U3 small nucleolar RNA-associated protein 13, C-terminalDomain
JA [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth B3]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
JA [auth B3]IPR001680WD40 repeatRepeat
JA [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth B2]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth B2]IPR007148Small-subunit processome, Utp12Domain
IA [auth B2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth B2]IPR051570TBC1 domain family involved in cilium biogenesisFamily
IA [auth B2]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IA [auth B2]IPR001680WD40 repeatRepeat
IA [auth B2]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
HA [auth B1]IPR019775WD40 repeat, conserved siteConserved Site
HA [auth B1]IPR007148Small-subunit processome, Utp12Domain
HA [auth B1]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
HA [auth B1]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
HA [auth B1]IPR001680WD40 repeatRepeat
HA [auth B1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
HA [auth B1]IPR027145Periodic tryptophan protein 2Family
GA [auth AG]IPR053826WD repeat-containing protein 75Family
GA [auth AG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth AG]IPR001680WD40 repeatRepeat
GA [auth AG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth AF]IPR019775WD40 repeat, conserved siteConserved Site
FA [auth AF]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth AF]IPR001680WD40 repeatRepeat
FA [auth AF]IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalDomain
FA [auth AF]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EA [auth AE]IPR016024Armadillo-type foldHomologous Superfamily
EA [auth AE]IPR040191U3 small nucleolar RNA-associated protein 10Family
EA [auth AE]IPR021133HEAT, type 2Repeat
EA [auth AE]IPR056473Utp10/HEAT1, HEAT-repeats domainDomain
EA [auth AE]IPR011989Armadillo-like helicalHomologous Superfamily
EA [auth AE]IPR022125U3 small nucleolar RNA-associated protein 10, N-terminalDomain
EA [auth AE]IPR012954BP28, C-terminal domainDomain
DA [auth A9]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
CA [auth A8]IPR053881Utp8, C-terminalDomain
CA [auth A8]IPR018843Utp8, beta-propellerDomain
BA [auth A5]IPR052414U3 small nucleolar RNA-associated WD repeat-containing proteinFamily
BA [auth A5]IPR007148Small-subunit processome, Utp12Domain
BA [auth A5]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth A5]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
AA [auth A4]IPR046351U3 small nucleolar RNA-associated protein 4Family
AA [auth A4]IPR001680WD40 repeatRepeat
AA [auth A4]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
AA [auth A4]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
Y [auth 3G],
Z [auth 3H]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Y [auth 3G],
Z [auth 3H]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
Y [auth 3G],
Z [auth 3H]
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
Y [auth 3G],
Z [auth 3H]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth 3G],
Z [auth 3H]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
X [auth 3F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
X [auth 3F]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
X [auth 3F]IPR001680WD40 repeatRepeat
X [auth 3F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth 3E]IPR042239Nop, C-terminal domainHomologous Superfamily
W [auth 3E]IPR012974Nucleolar protein 58/56, N-terminalDomain
W [auth 3E]IPR002687Nop domainDomain
W [auth 3E]IPR012976NOSICDomain
W [auth 3E]IPR036070Nop domain superfamilyHomologous Superfamily
W [auth 3E]IPR045056Nucleolar protein Nop56/Nop58Family
V [auth 3D]IPR042239Nop, C-terminal domainHomologous Superfamily
V [auth 3D]IPR012974Nucleolar protein 58/56, N-terminalDomain
V [auth 3D]IPR002687Nop domainDomain
V [auth 3D]IPR012976NOSICDomain
V [auth 3D]IPR036070Nop domain superfamilyHomologous Superfamily
V [auth 3D]IPR045056Nucleolar protein Nop56/Nop58Family
T [auth 3B],
U [auth 3C]
IPR000692rRNA 2'-O-methyltransferase fibrillarin-likeFamily
T [auth 3B],
U [auth 3C]
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
T [auth 3B],
U [auth 3C]
IPR020813Fibrillarin, conserved siteConserved Site
S [auth Sd]IPR028626Ribosomal protein eS28 conserved siteConserved Site
S [auth Sd]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth Sd]IPR000289Small ribosomal subunit protein eS28Family
R [auth Sc]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
R [auth Sc]IPR000592Small ribosomal subunit protein eS27Family
R [auth Sc]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth SZ]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
Q [auth SZ]IPR001976Small ribosomal subunit protein eS24Family
Q [auth SZ]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth SZ]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
P [auth SY]IPR006032Small ribosomal subunit protein uS12Family
P [auth SY]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth SY]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
O [auth SX]IPR000630Small ribosomal subunit protein uS8Family
O [auth SX]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
O [auth SX]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
N [auth SR]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
N [auth SR]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
N [auth SR]IPR000754Small ribosomal subunit protein uS9Family
N [auth SR]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth SP]IPR001971Small ribosomal subunit protein uS11Family
M [auth SP]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth SP]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
L [auth SO]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
L [auth SO]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth SO]IPR000589Small ribosomal subunit protein uS15Family
L [auth SO]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
K [auth SM]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth SM]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth SM]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth SM]IPR000266Small ribosomal subunit protein uS17Family
K [auth SM]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
J [auth SK]IPR002942RNA-binding S4 domainDomain
J [auth SK]IPR022801Small ribosomal subunit protein uS4Family
J [auth SK]IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
J [auth SK]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth SK]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth SK]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily