6LQE

Crystal structure of Arabidopsis ARID5 PHD finger in complex with H3K4me3 peptide

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APHD_5e6lqeA1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: FYVE/PHD zinc fingerF: PHD_5ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth P]PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
AT-rich interactive domain-containing protein 4 -
B [auth P]15-mer peptide from Histone H3.2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001606ARID DNA-binding domainDomain
IPR001965Zinc finger, PHD-typeDomain
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
IPR036431ARID DNA-binding domain superfamilyHomologous Superfamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR042293AT-rich interactive domain-containing protein 4Family
B [auth P]IPR009072Histone-foldHomologous Superfamily
B [auth P]IPR007125Histone H2A/H2B/H3Domain
B [auth P]IPR000164Histone H3/CENP-AFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth P]M3L Parent Component: LYS

RESID:  AA0074

PSI-MOD :  N6,N6,N6-trimethyl-L-lysine MOD:00083