6LL7 | pdb_00006ll7

Type II inorganic pyrophosphatase (PPase) from the psychrophilic bacterium Shewanella sp. AS-11, Mn-activated form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6ll7d_	Alpha and beta proteins (a/b)	DHH phosphoesterases	DHH phosphoesterases	automated matches	automated matches	(Shewanella sp. AS-11 ) [TaxId: 912551 ],	SCOPe (2.08)
C	d6ll7c_	Alpha and beta proteins (a/b)	DHH phosphoesterases	DHH phosphoesterases	automated matches	automated matches	(Shewanella sp. AS-11 ) [TaxId: 912551 ],	SCOPe (2.08)
B	d6ll7b_	Alpha and beta proteins (a/b)	DHH phosphoesterases	DHH phosphoesterases	automated matches	automated matches	(Shewanella sp. AS-11 ) [TaxId: 912551 ],	SCOPe (2.08)
A	d6ll7a_	Alpha and beta proteins (a/b)	DHH phosphoesterases	DHH phosphoesterases	automated matches	automated matches	(Shewanella sp. AS-11 ) [TaxId: 912551 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Manganese-dependent inorganic pyrophosphatase (family II)	8098045	4003453	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	DHH phosphoesterases	8098046	3000896	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	DHH phosphoesterases	8098046	3000896	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DHH phosphoesterases	8098046	3000896	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	DHH phosphoesterases	8098046	3000896	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Lactamase_B	e6ll7D1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Lactamase_B	ECOD (develop294)
C	Lactamase_B	e6ll7C1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Lactamase_B	ECOD (develop294)
B	Lactamase_B	e6ll7B1	A: alpha bundles	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Lactamase_B	ECOD (develop294)
A	IF-2	e6ll7A1	A: alpha bundles	X: Rubredoxin-like	H: Ferritin/Heme oxygenase	T: Heme oxygenase/Ribonucleotide reductase	F: IF-2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (utative)
D	3.10.310.20	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
C	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (utative)
C	3.10.310.20	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
B	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (utative)
B	3.10.310.20	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)
A	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (utative)
A	3.10.310.20	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Inorganic pyrophosphatase	pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity inorganic diphosphate phosphatase activity hydrolase activity, acting on acid anhydrides catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001667	DDH domain	Domain
A, B, C, D	IPR004097	DHHA2 domain	Domain
A, B, C, D	IPR038763	DHH phosphoesterase superfamily	Homologous Superfamily
A, B, C, D	IPR038222	DHHA2 domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.