6LBN | pdb_00006lbn

Structure of SIL1-bound FEM1C

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rrp44_S1	e6lbnA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Rrp44_S1	ECOD (v294.1)
B	Rrp44_S1	e6lbnB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Rrp44_S1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12796	Ankyrin repeats (3 copies) (Ank_2)	Ankyrin repeats (3 copies)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein fem-1 homolog C,Peptide from Nucleotide exchange factor SIL1	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity unfolded protein binding protein binding binding enzyme regulator activity nucleoside-triphosphatase regulator activity molecular function regulator activity adenyl-nucleotide exchange factor activity ATPase regulator activity identical protein binding	catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process catabolic process ubiquitin-dependent protein catabolic process via the C-end degron rule pathway primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport protein folding biosynthetic process gene expression macromolecule biosynthetic process protein maturation establishment of protein localization to membrane protein targeting cotranslational protein targeting to membrane localization within membrane protein targeting to membrane	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex cullin-RING ubiquitin ligase complex Cul2-RING ubiquitin ligase complex endomembrane system endoplasmic reticulum lumen endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002110	Ankyrin repeat	Repeat
A, B	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily
A, B	IPR013918	Nucleotide exchange factor Fes1	Domain
A, B	IPR011989	Armadillo-like helical	Homologous Superfamily
A, B	IPR050693	SIL1/FES1/HPBP1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9H173	atypical teratoid rhabdoid tumor large cell medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia glioblastoma lung cancer pancreatic intraductal papillary-mucinous carcinoma spina bifida invasive ductal breast carcinoma Malignant neoplasm of breast pancreatic intraductal papillary-mucinous neoplasm tuberculosis Marinesco-Sjogren syndrome prostate cancer primary cerebellar degeneration atypical teratoid rhabdoid tumor large cell medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia glioblastoma lung cancer pancreatic intraductal papillary-mucinous carcinoma spina bifida invasive ductal breast carcinoma Malignant neoplasm of breast pancreatic intraductal papillary-mucinous neoplasm tuberculosis Marinesco-Sjogren syndrome prostate cancer primary cerebellar degeneration arthrogryposis Cerebellar Ataxia, Early Onset intellectual disability ovarian cancer subependymal giant cell astrocytoma cataract Charcot-Marie-Tooth disease rhabdomyolysis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.