6LA5 | pdb_00006la5

Cryo-EM structure of echovirus 11 complexed with its attaching receptor CD55 at pH 7.4


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilySushi/CCP/SCR domain 8044483 3000902 SCOP2B (2022-06-29)
ESCOP2B SuperfamilySushi/CCP/SCR domain 8044485 3000902 SCOP2B (2022-06-29)
CSCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8101254 4003466 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8101255 3000918 SCOP2 (2022-06-29)
ASCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8101612 4003466 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8101613 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ERrp44_S1e6la5E1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (v294.1)
DRrp44_S1e6la5D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (v294.1)
CRrp44_S1e6la5C1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (v294.1)
BRrp44_S1e6la5B1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (v294.1)
ARrp44_S1e6la5A1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Rrp44_S1ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00084Sushi repeat (SCR repeat) (Sushi)Sushi repeat (SCR repeat)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Complement decay-accelerating factor
Capsid protein VP4
Capsid protein VP3
Capsid protein VP2
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000436Sushi/SCR/CCP domainDomain
IPR035976Sushi/SCR/CCP superfamilyHomologous Superfamily
IPR050350Complement & Cell Adhesion RegulatorsFamily
IPR029053Viral coat protein subunitHomologous Superfamily
IPR003138Picornavirus coat protein VP4Family
IPR001676Picornavirus capsidDomain
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR029053Viral coat protein subunitHomologous Superfamily
IPR001676Picornavirus capsidDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain