6L8F
Crystal structure of heterotetrameric complex of YoeB-YefM toxin-antitoxin from Staphylococcus aureus.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth D] | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
E [auth H] | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
G | SCOP2 Family | YoeB/Txe-like | 8099285 | 4003384 | SCOP2 (2022-06-29) |
G | SCOP2 Superfamily | RelE-like | 8099286 | 3000741 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth D] | PF06769 | e6l8fD1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
C | PF06769 | e6l8fC1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
E [auth H] | PF06769 | e6l8fH1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
G | PF06769 | e6l8fG1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: PF06769 | ECOD (1.6) |
B | PF02604 | e6l8fB1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
D [auth A] | PF02604 | e6l8fA1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
F | PF02604 | e6l8fF1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
H [auth E] | PF02604 | e6l8fE1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PF02604 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth D], C, E [auth H], G | PF06769 | YoeB-like toxin of bacterial type II toxin-antitoxin system (YoeB_toxin) | YoeB-like toxin of bacterial type II toxin-antitoxin system | YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as a ... | Domain |
B, D [auth A], F, H [auth E] | PF02604 | Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox) | Antitoxin Phd_YefM, type II toxin-antitoxin system | Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth D], C, E [auth H], G | IPR009614 | Toxin YoeB | Family |
A [auth D], C, E [auth H], G | IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily |
B, D [auth A], F, H [auth E] | IPR006442 | Type II toxin-antitoxin system, antitoxin Phd/YefM | Family |
B, D [auth A], F, H [auth E] | IPR036165 | YefM-like superfamily | Homologous Superfamily |