6L8E
Crystal structure of heterohexameric YoeB-YefM complex bound to 26bp-DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
F | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RelE-like | 8099286 | 3000741 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PhdYeFM_antitox | e6l8eA1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
B | PhdYeFM_antitox | e6l8eB1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
C | PhdYeFM_antitox | e6l8eC1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
D | PhdYeFM_antitox | e6l8eD1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
I | PhdYeFM_antitox | e6l8eI1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
K | PhdYeFM_antitox | e6l8eK1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
L | PhdYeFM_antitox | e6l8eL1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
J | PhdYeFM_antitox | e6l8eJ1 | A: a+b duplicates or obligate multimers | X: YefM-like (From Topology) | H: YefM-like (From Topology) | T: YefM-like | F: PhdYeFM_antitox | ECOD (1.6) |
F | YoeB_toxin | e6l8eF1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YoeB_toxin | ECOD (1.6) |
M | YoeB_toxin | e6l8eM1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YoeB_toxin | ECOD (1.6) |
N | YoeB_toxin | e6l8eN1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YoeB_toxin | ECOD (1.6) |
E | YoeB_toxin | e6l8eE1 | A: a+b two layers | X: RelE-like | H: RelE-like (From Topology) | T: RelE-like | F: YoeB_toxin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02604 | Antitoxin Phd_YefM, type II toxin-antitoxin system (PhdYeFM_antitox) | Antitoxin Phd_YefM, type II toxin-antitoxin system | Members of this family act as antitoxins in type II toxin-antitoxin systems [1]. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin [2] ... | Domain | |
PF06769 | YoeB-like toxin of bacterial type II toxin-antitoxin system (YoeB_toxin) | YoeB-like toxin of bacterial type II toxin-antitoxin system | YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in Pfam:PF02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as a ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR006442 | Type II toxin-antitoxin system, antitoxin Phd/YefM | Family | |
IPR051405 | phD/YefM antitoxin | Family | |
IPR036165 | YefM-like superfamily | Homologous Superfamily | |
IPR009614 | Toxin YoeB | Family | |
IPR035093 | Toxin-antitoxin system, RelE/ParE toxin domain superfamily | Homologous Superfamily |