6KU0 | pdb_00006ku0

Crystal structure of MyoVa-GTD in complex with MICAL1-GTBM

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d6ku0c_	All alpha proteins	alpha-alpha superhelix	DIL domain-like	DIL domains from class V myosins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d6ku0a_	All alpha proteins	alpha-alpha superhelix	DIL domain-like	DIL domains from class V myosins	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	DIL	e6ku0C1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: DIL	ECOD (1.6)
A	DIL	e6ku0A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: DIL	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF01843	DIL domain (DIL)	DIL domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Peptide from [F-actin]-monooxygenase MICAL1	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding actin binding protein-containing complex binding actin filament binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding monooxygenase activity oxidoreductase activity catalytic activity F-actin monooxygenase activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen NAD(P)H oxidase H2O2-forming activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor SH3 domain binding protein domain specific binding kinase binding protein kinase binding cation binding metal ion binding	sulfur compound metabolic process metabolic process cellular process sulfur oxidation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process sulfur compound metabolic process metabolic process cellular process sulfur oxidation regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death cellular component disassembly actin polymerization or depolymerization actin cytoskeleton organization protein-containing complex organization actin filament organization protein-containing complex disassembly actin filament depolymerization cellular component organization organelle organization actin filament-based process cellular component organization or biogenesis supramolecular fiber organization protein depolymerization cytoskeleton organization regulation of localization regulated exocytosis transport secretion regulation of transport export from cell regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport regulation of secretion regulation of regulated secretory pathway localization secretion by cell regulation of secretion by cell exocytosis regulation of exocytosis cellular response to stimulus response to stimulus signaling signal transduction cell communication cellular component biogenesis cellular component assembly actin filament bundle organization actin filament bundle assembly	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection midbody polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intermediate filament cytoskeleton intracellular organelle cytoskeleton membraneless organelle membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection midbody polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intermediate filament cytoskeleton intracellular organelle cytoskeleton membraneless organelle intermediate filament supramolecular fiber supramolecular polymer supramolecular complex actin cytoskeleton cytoplasm cytosol cell periphery plasma membrane membrane axon synapse hippocampal mossy fiber expansion neuron projection axon terminus hippocampal mossy fiber presynapse distal axon terminal bouton cell junction neuron projection terminus nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen intercellular bridge endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle vesicle organelle membrane actin filament ciliary basal body microtubule organizing center microtubule cytoskeleton
A, C	Unconventional myosin-Va	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding calmodulin binding identical protein binding cation binding calcium ion binding metal ion binding cytoskeletal protein binding actin binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity disordered domain specific binding protein domain specific binding polypeptide conformation or assembly isomerase activity isomerase activity microfilament motor activity macromolecular conformation isomerase activity	vesicle localization localization organelle localization secretory granule localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane pigment metabolic process pigment biosynthetic process vesicle localization localization organelle localization secretory granule localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane pigment metabolic process pigment biosynthetic process melanin metabolic process secondary metabolic process biosynthetic process secondary metabolite biosynthetic process phenol-containing compound metabolic process phenol-containing compound biosynthetic process metabolic process melanin biosynthetic process pigmentation developmental pigmentation developmental process anatomical structure morphogenesis odontogenesis anatomical structure development animal organ development animal organ morphogenesis establishment of organelle localization transport establishment of melanosome localization establishment of vesicle localization cellular pigmentation pigment granule transport establishment of pigment granule localization establishment of localization pigment granule localization establishment of localization in cell melanosome transport melanosome localization trans-synaptic signaling synaptic signaling regulation of biological process signaling anterograde trans-synaptic signaling biological regulation cell-cell signaling chemical synaptic transmission cell communication vesicle-mediated transport actin filament-based process actin filament-based movement establishment of protein localization nitrogen compound transport hormone secretion protein localization to extracellular region peptide secretion secretion by cell amide transport signal release regulation of biological quality secretion regulation of hormone levels establishment of protein localization to extracellular region export from cell protein secretion peptide transport protein transport peptide hormone secretion hormone transport insulin secretion inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis regulation of postsynaptic cytosolic calcium ion concentration regulation of cytosolic calcium ion concentration cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis pigment cell differentiation cellular developmental process cell differentiation melanocyte differentiation establishment of ER localization endoplasmic reticulum localization endoplasmic reticulum organization establishment of endoplasmic reticulum localization to postsynapse cellular component organization organelle organization cellular component organization or biogenesis endomembrane system organization cell junction organization synapse organization multicellular organismal process epithelium development epidermis development molting cycle process hair cycle developmental maturation tissue development skin development anatomical structure maturation skin epidermis development hair follicle development molting cycle hair cycle process hair follicle maturation sensory perception of light stimulus system process sensory perception nervous system process visual perception behavior locomotory behavior locomotion involved in locomotory behavior locomotion myelination multicellular organism development axon ensheathment ensheathment of neurons nervous system development system development cellular response to stimulus cellular response to nitrogen compound response to stimulus response to endogenous stimulus response to peptide hormone response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to chemical stimulus response to hormone response to chemical response to insulin cellular response to insulin stimulus cellular response to hormone stimulus vesicle transport along actin filament vesicle cytoskeletal trafficking intracellular transport cytoskeleton-dependent intracellular transport actin filament-based transport exocytosis fatty acid metabolic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process long-chain fatty acid biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton actomyosin cytoplasm cytosol membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton actomyosin cytoplasm cytosol membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle endoplasmic reticulum smooth endoplasmic reticulum protein-containing complex myosin complex synapse cell junction glutamatergic synapse non-motile cilium 9+0 non-motile cilium cilium neuron projection photoreceptor outer segment plasma membrane bounded cell projection cell projection photoreceptor cell cilium unconventional myosin complex Golgi apparatus somatodendritic compartment cell body neuronal cell body insulin-responsive compartment postsynapse pigment granule melanosome polymeric cytoskeletal fiber intermediate filament cytoskeleton intermediate filament supramolecular fiber supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
B, D	IPR050540	F-actin Monooxygenase Mical	Family
B, D	IPR001715	Calponin homology domain	Domain
B, D	IPR002938	FAD-binding domain	Domain
B, D	IPR022735	bMERB domain	Domain
B, D	IPR001781	Zinc finger, LIM-type	Domain
B, D	IPR036872	CH domain superfamily	Homologous Superfamily
A, C	IPR002710	Dilute domain	Domain
A, C	IPR000048	IQ motif, EF-hand binding site	Binding Site
A, C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, C	IPR004009	Myosin, SH3 domain	Domain
A, C	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, C	IPR001609	Myosin head, motor domain-like	Domain
A, C	IPR036103	Class V myosin, motor domain	Domain
A, C	IPR037988	Myosin 5a, cargo-binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D	Pharos: Q8TDZ2	Autosomal dominant epilepsy with auditory features Malignant neoplasm of breast oligodendroglioma pancreatic ductal adenocarcinoma Pick disease gastric carcinoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma spina bifida malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.