6KDV | pdb_00006kdv

Crystal structure of TtCas1-DNA complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth C]	SCOP2B Superfamily	CRISPR associated protein Cas1	8099530	3002164	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	CRISPR associated protein Cas1	8099530	3002164	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	CRISPR associated protein Cas1	8099530	3002164	SCOP2B (2022-06-29)
A [auth B]	SCOP2 Family	CRISPR associated protein Cas1	8099529	4006578	SCOP2 (2022-06-29)
A [auth B]	SCOP2 Superfamily	CRISPR associated protein Cas1	8099530	3002164	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	Ribonuc_L-PSP	e6kdvC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Ribonuc_L-PSP	ECOD (v294.1)
C [auth D]	Ribonuc_L-PSP	e6kdvD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Ribonuc_L-PSP	ECOD (v294.1)
B [auth A]	Ribonuc_L-PSP	e6kdvA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: Ribonuc_L-PSP	ECOD (v294.1)
A [auth B]	Dyp_perox_N	e6kdvB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Dyp_perox_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	1.20.120.920	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	CRISPR-associated endonuclease Cas1, C-terminal domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A], C [auth D], D [auth C]	PF01867	CRISPR associated protein Cas1 (Cas_Cas1)	CRISPR associated protein Cas1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F, H	DNA (5'-D(TPTPTPTPTPTPTPTPTPTPCPCPAPGPCPAPTPCPGPAPCPTP*C)-3')	-	-	-
E, G	DNA (5'-D(GPAPGPTPCPGPAPTPGPCPTPGPGPTPTPTPTPTPTPTPTPTP*T)-3')	-	-	-
A [auth B], B [auth A], C [auth D], D [auth C]	CRISPR-associated endonuclease Cas1 2	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity DNA binding binding nucleic acid binding hydrolase activity cation binding ion binding metal ion binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity DNA binding binding nucleic acid binding hydrolase activity cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C [auth D], D [auth C]	IPR019851	CRISPR-associated protein Cas1, ECOLI subtype	Family
A [auth B], B [auth A], C [auth D], D [auth C]	IPR002729	CRISPR-associated protein Cas1	Family
A [auth B], B [auth A], C [auth D], D [auth C]	IPR033641	CRISPR-associated protein Cas1, type I-E	Family
A [auth B], B [auth A], C [auth D], D [auth C]	IPR042206	CRISPR-associated endonuclease Cas1, C-terminal domain	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C]	IPR042211	CRISPR-associated endonuclease Cas1, N-terminal domain	Homologous Superfamily
A [auth B], B [auth A], C [auth D], D [auth C]	IPR050646	CRISPR-associated endonuclease Cas1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.