6KAM | pdb_00006kam

Crystal structure of FKRP in complex with Ba ion, CDP-ribtol, and sugar acceptor

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	bZIP_1	e6kamD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: bZIP_1	ECOD (v294.1)
C	bZIP_1	e6kamC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: bZIP_1	ECOD (v294.1)
B	bZIP_1	e6kamB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: bZIP_1	ECOD (v294.1)
A	bZIP_1	e6kamA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: bZIP_1	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF04991	LicD family (LicD)	LicD family	The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are ...	The LICD family of proteins show high sequence similarity and are involved in phosphorylcholine metabolism. There is evidence to show that LicD2 mutants have a reduced ability to take up choline, have decreased ability to adhere to host cells and are less virulent [1]. These proteins are part of the nucleotidyltransferase superfamily [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Fukutin-related protein	extracellular matrix binding binding protein binding laminin binding cation binding ion binding metal ion binding small molecule binding identical protein binding dystroglycan binding transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups	response to stimulus response to chemical response to xenobiotic stimulus carbohydrate metabolic process polyol metabolic process pentitol metabolic process primary metabolic process metabolic process cellular process alcohol metabolic process small molecule metabolic process developmental process multicellular organism development multicellular organismal process response to stimulus response to chemical response to xenobiotic stimulus carbohydrate metabolic process polyol metabolic process pentitol metabolic process primary metabolic process metabolic process cellular process alcohol metabolic process small molecule metabolic process developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development ossification bone mineralization biomineral tissue development tissue development cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular component organization or biogenesis monosaccharide metabolic process pentose metabolic process diaphragm development muscle structure development skeletal muscle organ development respiratory system development muscle organ development system process nervous system process neuromuscular process embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development heart development heart morphogenesis circulatory system development anatomical structure morphogenesis animal organ morphogenesis ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process nucleoside phosphate catabolic process organic acid metabolic process nucleobase-containing compound metabolic process glycolytic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process energy derivation by oxidation of organic compounds purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process skeletal muscle cell differentiation cellular developmental process skeletal muscle tissue development muscle cell differentiation myotube differentiation striated muscle tissue development cell differentiation skeletal muscle fiber differentiation muscle tissue development striated muscle cell differentiation creatine metabolic process modified amino acid metabolic process localization localization of cell cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway signaling biological regulation cell communication reelin-mediated signaling pathway signal transduction maintenance of protein location cellular localization maintenance of location maintenance of location in cell maintenance of protein localization in endoplasmic reticulum maintenance of protein location in cell macromolecule localization protein localization to organelle maintenance of protein localization in organelle intracellular protein localization protein localization to endoplasmic reticulum muscle contraction muscle system process adult walking behavior adult locomotory behavior behavior adult behavior locomotory behavior walking behavior neurogenesis gliogenesis glial cell differentiation connective tissue development intracellular signal transduction intracellular signaling cassette phosphatidylinositol 3-kinase/protein kinase B signal transduction sensory organ development eye development visual system development camera-type eye development sensory system development carbohydrate derivative biosynthetic process glycoprotein biosynthetic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via mannose protein O-linked glycosylation protein metabolic process macromolecule metabolic process response to activity lipid metabolic process gene expression protein maturation proteolysis protein processing response to corticosteroid response to lipid response to hormone response to steroid hormone response to endogenous stimulus response to glucocorticoid extracellular matrix organization basement membrane organization extracellular structure organization external encapsulating structure organization cell junction organization cell junction assembly filtration diaphragm assembly cell-cell junction assembly cell-cell junction organization protein import establishment of protein localization protein transport transport establishment of localization respiratory system process respiratory gaseous exchange by respiratory system tissue regeneration skeletal muscle tissue regeneration developmental growth growth regeneration tissue remodeling connective tissue replacement defense response response to stress inflammatory response neuron migration generation of neurons cell migration cell motility oxygen metabolic process response to alcohol response to oxygen-containing compound	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery sarcolemma plasma membrane membrane rough endoplasmic reticulum membrane-bounded organelle intracellular organelle organelle endoplasmic reticulum intracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery sarcolemma plasma membrane membrane rough endoplasmic reticulum membrane-bounded organelle intracellular organelle organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system Golgi apparatus Golgi membrane bounding membrane of organelle organelle membrane extracellular region extracellular space skeletal muscle myofibril intracellular membraneless organelle membraneless organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR055105	FKRP, stem domain	Domain
A, B, C, D	IPR052613	LicD transferase	Family
A, B, C, D	IPR007074	LicD/FKTN/FKRP, nucleotidyltransferase domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q9H9S5	muscular dystrophy-dystroglycanopathy type B5 limb-girdle muscular dystrophy muscular dystrophy-dystroglycanopathy, type A muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5 autosomal recessive limb-girdle muscular dystrophy type 2I congenital muscular dystrophy myopathy cardiomyopathy lissencephaly spectrum disorders muscular dystrophy MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2I rhabdomyolysis cataract intellectual disability muscle-eye-brain disease muscular dystrophy-dystroglycanopathy type B5 limb-girdle muscular dystrophy muscular dystrophy-dystroglycanopathy, type A muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A5 autosomal recessive limb-girdle muscular dystrophy type 2I congenital muscular dystrophy myopathy cardiomyopathy lissencephaly spectrum disorders muscular dystrophy MUSCULAR DYSTROPHY, LIMB-GIRDLE, TYPE 2I rhabdomyolysis cataract intellectual disability muscle-eye-brain disease muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4 sclerosing cholangitis arthrogryposis B-cell chronic lymphocytic leukemia muscular disease muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A1 attention deficit hyperactivity disorder, inattentive type congenital disorder of glycosylation hydrocephalus muscle tissue disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.