6K40 | pdb_00006k40

Crystal structure of alkyl hydroperoxide reductase from D. radiodurans R1

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ld6k40l_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Kd6k40k_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Jd6k40j_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Id6k40i_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Hd6k40h_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
G [auth F]d6k40f_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
F [auth G]d6k40g_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Ed6k40e_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Dd6k40d_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Cd6k40c_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Bd6k40b_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)
Ad6k40a_ All alpha proteins AhpD-like AhpD-like Atu0492-like automated matches (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
LC1-sete6k40L1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
KC1-sete6k40K1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
JC1-sete6k40J1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
IC1-sete6k40I1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
HC1-sete6k40H1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
G [auth F]C1-sete6k40F1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
F [auth G]C1-sete6k40G1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
EC1-sete6k40E1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
DC1-sete6k40D1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
CC1-sete6k40C1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
BC1-sete6k40B1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)
AC1-sete6k40A1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: C1-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
L1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
K1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
K1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
J1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
J1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
I1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
I1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
H1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
H1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
G [auth F]1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
G [auth F]1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
F [auth G]1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
F [auth G]1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
E1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
E1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
D1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
D1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
C1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
C1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
B1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
B1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)
A1.20.5.810 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces AhpD-likeCATH (utative)
A1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
C,
D,
E,
PF02627Carboxymuconolactone decarboxylase family (CMD)Carboxymuconolactone decarboxylase family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B,
C,
D,
E,
Alkyl hydroperoxide reductase AhpD - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B,
C,
D,
E,
IPR010195Uncharacterised peroxidase-relatedFamily
A,
B,
C,
D,
E,
IPR003779Alkyl hydroperoxide reductase AhpD/CMD-likeDomain
A,
B,
C,
D,
E,
IPR029032AhpD-likeHomologous Superfamily
A,
B,
C,
D,
E,
IPR004675Alkylhydroperoxidase AhpD coreDomain