6JNI

Crystal structure of the transcriptional regulator CadR from P. putida in complex with Zinc(II) and DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF13411	e6jniC1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
E	PF13411	e6jniE1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
F	PF13411	e6jniF1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
A	PF13411	e6jniA1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
B	PF13411	e6jniB1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
D	PF13411	e6jniD1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
G	PF13411	e6jniG1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)
H	PF13411	e6jniH1	A: alpha arrays	X: HTH	H: HTH	T: Putative DNA-binding domain	F: PF13411	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13411	MerR HTH family regulatory protein (MerR_1)	MerR HTH family regulatory protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	CadR	DNA binding binding organic cyclic compound binding nucleic acid binding transcription regulator activity DNA-binding transcription factor activity cation binding ion binding metal ion binding small molecule binding	regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular metabolic process positive regulation of RNA metabolic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of DNA-templated transcription cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process positive regulation of biosynthetic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of RNA biosynthetic process cellular process positive regulation of cellular biosynthetic process	-
I, K, M, O	DNA (25-MER)	-	-	-
J, L, N, P	DNA (25-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011791	Cd(II)/Pb(II)-responsive transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009061	Putative DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR047057	MerR transcriptional regulator	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000551	MerR-type HTH domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.