6JM4
The crystal structure of PB1 homo-dimer of human P62/SQSTM1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PB1 | e6jm4A1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PB1 | ECOD (1.6) |
D [auth C] | PB1 | e6jm4C1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PB1 | ECOD (1.6) |
B | PB1 | e6jm4B1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PB1 | ECOD (1.6) |
C [auth D] | PB1 | e6jm4D1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PB1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
D [auth C] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
B | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
C [auth D] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth C] | PF00564 | PB1 domain (PB1) | PB1 domain | - | Domain |
B, C [auth D] | PF00564 | PB1 domain (PB1) | PB1 domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth C] | IPR043145 | Zinc finger, ZZ-type superfamily | Homologous Superfamily |
A, D [auth C] | IPR000433 | Zinc finger, ZZ-type | Domain |
A, D [auth C] | IPR033741 | Sequestosome-1, UBA domain | Domain |
A, D [auth C] | IPR009060 | UBA-like superfamily | Homologous Superfamily |
A, D [auth C] | IPR000270 | PB1 domain | Domain |
A, D [auth C] | IPR052260 | Autophagy Receptor and Signaling Regulator | Family |
A, D [auth C] | IPR015940 | Ubiquitin-associated domain | Domain |
A, D [auth C] | IPR034866 | Sequestosome-1, PB1 domain | Domain |
B, C [auth D] | IPR043145 | Zinc finger, ZZ-type superfamily | Homologous Superfamily |
B, C [auth D] | IPR000433 | Zinc finger, ZZ-type | Domain |
B, C [auth D] | IPR033741 | Sequestosome-1, UBA domain | Domain |
B, C [auth D] | IPR009060 | UBA-like superfamily | Homologous Superfamily |
B, C [auth D] | IPR000270 | PB1 domain | Domain |
B, C [auth D] | IPR052260 | Autophagy Receptor and Signaling Regulator | Family |
B, C [auth D] | IPR015940 | Ubiquitin-associated domain | Domain |
B, C [auth D] | IPR034866 | Sequestosome-1, PB1 domain | Domain |