6JLU

Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02 angstrom resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
NA [auth o]SCOP2 FamilyPsbO-like8095676 4002770 SCOP2 (2022-06-29)
NA [auth o]SCOP2 SuperfamilyOMPA barrel-like8095677 3000208 SCOP2 (2022-06-29)
OSCOP2B SuperfamilyOMPA barrel-like8095677 3000208 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like8094223 3000893 SCOP2B (2022-06-29)
SA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like8094223 3000893 SCOP2B (2022-06-29)
TA [auth v]SCOP2 FamilyMonodomain cytochrome c8094924 4000635 SCOP2 (2022-06-29)
TA [auth v]SCOP2 SuperfamilyCytochrome c8094925 3000815 SCOP2 (2022-06-29)
U [auth V]SCOP2B SuperfamilyCytochrome c8094925 3000815 SCOP2B (2022-06-29)
GA [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094731 3001547 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH8094731 3001547 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00124e6jluA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
Z [auth a]PF00124e6jlua1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
JPF01788e6jluJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
IA [auth j]PF01788e6jluj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
JA [auth k]PF02533e6jluk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
KPF02533e6jluK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
KA [auth l]PF02419e6jlul1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
LPF02419e6jluL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
LA [auth m]F_UNCLASSIFIEDe6jlum1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: F_UNCLASSIFIEDECOD (1.6)
MF_UNCLASSIFIEDe6jluM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: F_UNCLASSIFIEDECOD (1.6)
NA [auth o]PF01716e6jluo1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
OPF01716e6jluO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
OA [auth p]PF00504e6jlup1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
PPF00504e6jluP1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
QF_UNCLASSIFIEDe6jluQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: F_UNCLASSIFIEDECOD (1.6)
PA [auth q]F_UNCLASSIFIEDe6jluq1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: F_UNCLASSIFIEDECOD (1.6)
RA [auth t]PF01405e6jlut1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
S [auth T]PF01405e6jluT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
AA [auth b]PF00421e6jlub1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
AA [auth b]PF00421e6jlub2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
BPF00421e6jluB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
BPF00421e6jluB2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
T [auth U]PF06514e6jluU1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PF06514ECOD (1.6)
SA [auth u]PF06514e6jluu1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PF06514ECOD (1.6)
TA [auth v]PF14495e6jluv1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF14495ECOD (1.6)
U [auth V]PF14495e6jluV1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF14495ECOD (1.6)
VA [auth x]PF06596e6jlux1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
W [auth X]PF06596e6jluX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
WA [auth y]PF06298e6jluy1 A: extended segmentsX: Photosystem II protein Y, psbY (From Topology)H: Photosystem II protein Y, psbY (From Topology)T: Photosystem II protein Y, psbYF: PF06298ECOD (1.6)
X [auth Y]PF06298e6jluY1 A: extended segmentsX: Photosystem II protein Y, psbY (From Topology)H: Photosystem II protein Y, psbY (From Topology)T: Photosystem II protein Y, psbYF: PF06298ECOD (1.6)
Y [auth Z]PF01737e6jluZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
XA [auth z]PF01737e6jluz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
YA [auth 0]PF00504e6jlu01 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
IB [auth 10]PF00504e6jlu101 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
DB [auth 5]PF00504e6jlu51 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
GB [auth 8]PF00504e6jlu81 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
JB [auth 11]PF00504e6jlu111 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
LB [auth 13]PF00504e6jlu131 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
MB [auth 14]PF00504e6jlu141 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
NB [auth 15]PF00504e6jlu151 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
OB [auth 16]PF00504e6jlu161 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
AB [auth 2]PF00504e6jlu21 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
BB [auth 3]PF00504e6jlu31 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
CB [auth 4]PF00504e6jlu41 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
EB [auth 6]PF00504e6jlu61 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
FB [auth 7]PF00504e6jlu71 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
KB [auth 12]PF00504e6jlu121 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
PB [auth 17]PF00504e6jlu171 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
QB [auth 18]PF00504e6jlu181 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
ZA [auth 1]PF00504e6jlu11 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
HB [auth 9]PF00504e6jlu91 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
RB [auth 19]PF00504e6jlu191 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
BA [auth c]PF00421e6jluc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
CPF00421e6jluC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
CA [auth d]PF00124e6jlud1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
DPF00124e6jluD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
DA [auth e]PF00283,PF00284e6jlue1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
EPF00283,PF00284e6jluE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
FPF00283e6jluF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
EA [auth f]PF00283e6jluf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
FA [auth g]PF18240e6jlug1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF18240ECOD (1.6)
GPF18240e6jluG1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF18240ECOD (1.6)
GA [auth h]PF00737e6jluh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
HPF00737e6jluH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
IPF02532e6jluI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)
HA [auth i]PF02532e6jlui1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
NA [auth o],
O
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
SA [auth u],
T [auth U]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
TA [auth v],
U [auth V]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
VA [auth x],
W [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
GA [auth h],
H
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
Z [auth a]
PsbA---
IA [auth j],
J
PsbJ---
JA [auth k],
K
PsbK---
KA [auth l],
L
PsbL---
LA [auth m],
M
PsbM---
MA [auth n],
N
Psb34---
NA [auth o],
O
Extrinsic protein in photosystem II-
OA [auth p],
P
FCP-D---
PA [auth q],
Q
Extrinsic protein in photosystem II- -
QA [auth r],
R
PsbG---
RA [auth t],
S [auth T]
PsbT---
AA [auth b],
B
PsbB---
SA [auth u],
T [auth U]
Extrinsic protein in photosystem II-
TA [auth v],
U [auth V]
Cytochrome c-550
UA [auth w],
V [auth W]
PsbW---
VA [auth x],
W [auth X]
Photosystem II reaction center X protein-
WA [auth y],
X [auth Y]
PsbY---
XA [auth z],
Y [auth Z]
PsbZ---
IB [auth 10],
YA [auth 0]
FCP-E---
FCP-A---
HB [auth 9],
RB [auth 19]
FCP-F---
BA [auth c],
C
PsbC---
CA [auth d],
D
PsbD---
DA [auth e],
E
PsbE---
EA [auth f],
F
PsbF---
FA [auth g],
G
Psb31---
GA [auth h],
H
Photosystem II reaction center protein H
HA [auth i],
I
PsbI---