6JKW | pdb_00006jkw

Seleno-methionine PNGM-1 from deep-sea sediment metagenome


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HNUDIXe6jkwH1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
GNUDIXe6jkwG1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
FNUDIXe6jkwF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
ENUDIXe6jkwE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
DNUDIXe6jkwD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
CNUDIXe6jkwC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
BNUDIXe6jkwB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)
ANUDIXe6jkwA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: a+b domain in acetyl-CoA synthetase-like proteinsT: a+b domain in acetyl-CoA synthetase-like proteinsF: NUDIXECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
G3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
F3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
E3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
D3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
C3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
B3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)
A3.60.15.10 Alpha Beta 4-Layer Sandwich Metallo-beta-lactamase Chain ACATH (utative)

AMR Gene: CARD Annotation CARD Database Homepage

ChainsAccessionShort NameDescriptionProvenance Source (Version)
A, B, C, D, E
ARO:3004571PNGM-1PNGM-1 is a subclass B3 metallo-beta-lactamase first identified from a deep-sea sediment meta-genome. PNGM-1 is shown to reduce susceptibility to extended- and broad-spectrum cephalosporins, carbapenems, and penicillins. PNGM-1 is a novel metallo-beta-lactamase which predates the current antibiotic era.CARD (4.0.1)

AMR Gene Family: CARD Annotation CARD Database Homepage

ChainsAccessionGene FamilyDrug Class Resistance MachanismProvenance Source (Version)
A, B, C, D, E
ARO:3004570PNGM beta-lactamasecarbapenem, cephalosporin, penicillin beta-lactamantibiotic inactivationCARD (4.0.1)