6JIX | pdb_00006jix

The cyrstal structure of taurine:2-oxoglutarate aminotransferase from Bifidobacterium kashiwanohense, in complex with PLP and glutamate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6jixd_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Bifidobacterium catenulatum subsp. puerorum PV20-2 ) [TaxId: 1447716 ],	SCOPe (2.08)
C	d6jixc_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Bifidobacterium catenulatum subsp. puerorum PV20-2 ) [TaxId: 1447716 ],	SCOPe (2.08)
B [auth A]	d6jixa_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Bifidobacterium catenulatum subsp. puerorum PV20-2 ) [TaxId: 1447716 ],	SCOPe (2.08)
A [auth B]	d6jixb_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	automated matches	automated matches	(Bifidobacterium catenulatum subsp. puerorum PV20-2 ) [TaxId: 1447716 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	PLP-dependent transferases	8096140	3000954	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PLP-dependent transferases	8096140	3000954	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	GABA-aminotransferase-like	8096139	4000675	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	PLP-dependent transferases	8096140	3000954	SCOP2 (2022-06-29)
A [auth B]	SCOP2B Superfamily	PLP-dependent transferases	8096140	3000954	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MG4	e6jixD1	A: alpha bundles	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: MG4	ECOD (develop294)
C	MG4	e6jixC1	A: alpha bundles	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: MG4	ECOD (develop294)
B [auth A]	RhoGEF	e6jixA1	A: alpha bundles	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: RhoGEF	ECOD (develop294)
A [auth B]	MG4	e6jixB1	A: alpha bundles	X: P-loop domains-like	H: Helical bundle in flu nucleocapsid protein	T: Helical bundle in flu nucleocapsid protein	F: MG4	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
C	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
B [auth A]	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)
A [auth B]	3.40.640.10	Alpha Beta	3-Layer(aba) Sandwich	Aspartate Aminotransferase	domain 2	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A], C, D	taurine:2-oxoglutarate aminotransferase	transferase activity, transferring nitrogenous groups transaminase activity transferase activity catalytic activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A], C, D	IPR049704	Aminotransferases class-III pyridoxal-phosphate attachment site	Conserved Site
A [auth B], B [auth A], C, D	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A [auth B], B [auth A], C, D	IPR005814	Aminotransferase class-III	Family
A [auth B], B [auth A], C, D	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A [auth B], B [auth A], C, D	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.