6JC5 | pdb_00006jc5

Crystal structure of the blue fluorescent protein with a Leu-Leu-Gly tri-peptide chromophore derived from the purple chromoprotein of Stichodactyla haddoni

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6jc5h_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
G	d6jc5g1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
G	d6jc5g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
F	d6jc5f_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
E	d6jc5e_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc5d1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
D	d6jc5d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc5c1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
C	d6jc5c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc5b1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
B	d6jc5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
A	d6jc5a1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)
A	d6jc5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Stichodactyla haddoni ) [TaxId: 475174 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2 Family	Fluorescent proteins	8094858	4001049	SCOP2 (2022-06-29)
H	SCOP2 Superfamily	GFP-like	8094859	3000576	SCOP2 (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GFP-like	8094859	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	p450	e6jc5H1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
G	p450	e6jc5G1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
F	p450	e6jc5F1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
E	p450	e6jc5E1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
D	p450	e6jc5D1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
C	p450	e6jc5C1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
B	p450	e6jc5B1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)
A	p450	e6jc5A1	A: alpha bundles	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: p450	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	shBFP	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.