Annotations: 6J55

Crystal structure of an iron superoxide dismutate (FeSOD) from a pathogenic Acanthamoeba castellanii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d6j55l1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
L	d6j55l2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
L	d6j55l3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
K	d6j55k1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
K	d6j55k2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
J	d6j55j1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
J	d6j55j2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
I	d6j55i1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
I	d6j55i2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
H	d6j55h1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
H	d6j55h2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
G	d6j55g1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
G	d6j55g2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
F	d6j55f1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
F	d6j55f2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
E	d6j55e1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
E	d6j55e2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
D	d6j55d1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
D	d6j55d2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
D	d6j55d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
C	d6j55c1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
C	d6j55c2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
C	d6j55c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
B	d6j55b1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
B	d6j55b2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
B	d6j55b3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
A	d6j55a1	All alpha proteins	Long alpha-hairpin	Fe,Mn superoxide dismutase (SOD), N-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
A	d6j55a2	Alpha and beta proteins (a+b)	Fe,Mn superoxide dismutase (SOD), C-terminal domain	Fe,Mn superoxide dismutase (SOD), C-terminal domain	automated matches	automated matches	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)
A	d6j55a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Amoeba (Acanthamoeba castellanii ) [TaxId: 5755 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	bCoV_S1_N	e6j55L1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
K	bCoV_S1_N	e6j55K1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
J	bCoV_S1_N	e6j55J1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
I	bCoV_S1_N	e6j55I1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
H	bCoV_S1_N	e6j55H1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
G	bCoV_S1_N	e6j55G1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
F	bCoV_S1_N	e6j55F1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
E	bCoV_S1_N	e6j55E1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
D	bCoV_S1_N	e6j55D1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
C	bCoV_S1_N	e6j55C1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
B	bCoV_S1_N	e6j55B1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)
A	bCoV_S1_N	e6j55A1	A: a/b three-layered sandwiches	X: Ten stranded beta/alpha barrel	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: bCoV_S1_N	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Superoxide dismutase	cation binding ion binding binding metal ion binding small molecule binding superoxide dismutase activity oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001189	Manganese/iron superoxide dismutase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR019833	Manganese/iron superoxide dismutase, binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR019832	Manganese/iron superoxide dismutase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR019831	Manganese/iron superoxide dismutase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6J55 | pdb_00006j55

Crystal structure of an iron superoxide dismutate (FeSOD) from a pathogenic Acanthamoeba castellanii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage