6J2N | pdb_00006j2n

yeast proteasome in substrate-processing state (C3-b)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth B]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
W [auth j]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064048 3000131 SCOP2B (2022-06-29)
R [auth D]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
Y [auth n]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064012 3000131 SCOP2B (2022-06-29)
O [auth A]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
V [auth c]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036842 3000131 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
L [auth f]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079504 3000131 SCOP2B (2022-06-29)
SA [auth X]SCOP2B SuperfamilyPH domain-like 8093403 3000134 SCOP2B (2022-06-29)
QA [auth V]SCOP2B SuperfamilyJAB1/MPN domain-like 8053248 3001105 SCOP2B (2022-06-29)
PA [auth U]SCOP2B SuperfamilyJAB1/MPN domain-like 8053272 3001105 SCOP2B (2022-06-29)
MA [auth R]SCOP2B SuperfamilyTPR-like 8057042 3001345 SCOP2B (2022-06-29)
MA [auth R]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057044 3000034 SCOP2B (2022-06-29)
BA [auth k]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyClass II glutamine amidotransferases 8079169 3000131 SCOP2B (2022-06-29)
AA [auth l]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064066 3000131 SCOP2B (2022-06-29)
S [auth E]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
Z [auth m]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064026 3000131 SCOP2B (2022-06-29)
Q [auth C]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
X [auth d]SCOP2B SuperfamilyClass II glutamine amidotransferases 8064020 3000131 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)
H [auth b]SCOP2B SuperfamilyClass II glutamine amidotransferases 8036787 3000131 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth e]e6j2ne1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
F [auth 6]e6j2n61 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
G [auth 7]e6j2n71 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
N [auth a]e6j2na1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
P [auth B]e6j2nB1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
W [auth j]e6j2nj1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
R [auth D]e6j2nD1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
Y [auth n]e6j2nn1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
CA [auth H]e6j2nH1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
DA [auth I]e6j2nI1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
O [auth A]e6j2nA1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
V [auth c]e6j2nc1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
E [auth 5]e6j2n51 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
L [auth f]e6j2nf1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
D [auth 4]e6j2n41 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
K [auth g]e6j2ng1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
UA [auth Z]e6j2nZ1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
SA [auth X]e6j2nX1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
RA [auth W]e6j2nW1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
C [auth 3]e6j2n31 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
J [auth h]e6j2nh1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
QA [auth V]e6j2nV1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
PA [auth U]e6j2nU1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
OA [auth T]e6j2nT1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
NA [auth S]e6j2nS1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
MA [auth R]e6j2nR1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
LA [auth Q]e6j2nQ1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
KA [auth P]e6j2nP1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
JA [auth O]e6j2nO1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
IA [auth N]e6j2nN1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
B [auth 2]e6j2n21 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
I [auth i]e6j2ni1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
GA [auth L]e6j2nL1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
FA [auth K]e6j2nK1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
BA [auth k]e6j2nk1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
U [auth G]e6j2nG1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
AA [auth l]e6j2nl1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
T [auth F]e6j2nF1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
S [auth E]e6j2nE1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
Z [auth m]e6j2nm1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
Q [auth C]e6j2nC1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
X [auth d]e6j2nd1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
A [auth 1]e6j2n11 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
H [auth b]e6j2nb1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth 6],
M [auth e]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
G [auth 7],
N [auth a]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
P [auth B],
W [auth j]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
P [auth B],
W [auth j]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
R [auth D],
Y [auth n]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
R [auth D],
Y [auth n]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
CA [auth H]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
CA [auth H]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
CA [auth H]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
DA [auth I]PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
DA [auth I]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
DA [auth I]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
DA [auth I]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
HA [auth M]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
HA [auth M]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
HA [auth M]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
HA [auth M]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
O [auth A],
V [auth c]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
O [auth A],
V [auth c]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
D [auth 4],
K [auth g]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
UA [auth Z]PF17781RPN1 N-terminal domain (RPN1_RPN2_N)RPN1 N-terminal domain- Repeat
UA [auth Z]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
SA [auth X]PF04683Proteasome complex subunit Rpn13, Pru domain (Rpn13_ADRM1_Pru)Proteasome complex subunit Rpn13, Pru domainThis family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of ...This family was thought originally to be involved in cell-adhesion [1,2], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain [4]. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold [5]. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 [5].
Domain
RA [auth W]PF13519von Willebrand factor type A domain (VWA_2)von Willebrand factor type A domainDomain
C [auth 3],
J [auth h]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
QA [auth V]PF2359426S proteasome regulatory subunit RPN11 C-terminal domain (RPN11_C)26S proteasome regulatory subunit RPN11 C-terminal domainThis entry represents the C-terminal helical region of 26S proteosomal subunits. This region is involved in forming a helical bundle with other RPN subunits to help with assembly of the proteosome lid [1]. Domain
PA [auth U]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
OA [auth T]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
NA [auth S]PF25573PSMD3-like, N-terminal TPR repeats (TPR_PSMD3_N)PSMD3-like, N-terminal TPR repeats- Repeat
NA [auth S]PF08375Proteasome regulatory subunit C-terminal (Rpn3_C)Proteasome regulatory subunit C-terminal- Family
NA [auth S]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
MA [auth R]PF2115426S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix (RPN7_PSMD6_C)26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helixRPN7/PSDM6 are regulatory subunits from the 26S proteasome. This entry represents the C-terminal helix. Domain
MA [auth R]PF1060226S proteasome subunit RPN7 (RPN7)26S proteasome subunit RPN7- Repeat
MA [auth R]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
LA [auth Q]PF1805526S proteasome regulatory subunit RPN6 N-terminal domain (RPN6_N)26S proteasome regulatory subunit RPN6 N-terminal domainThis is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory par ...This is the N-terminal domain found in RPN6 proteins (26S proteasome regulatory subunit). The 26S proteasome holocomplex consists of a 28-subunit barrel-shaped core particle (CP) in the center capped at the top and bottom by 19-subunit regulatory particles (RPs). The CP forms the catalytic chamber and the RP is formed from two subcomplexes known as the lid and the base [1]. The lid comprises nine Rpn subunits in yeast (Rpn3/5/6/7/8/9/11/12/15) and the base comprises three Rpn subunits (Rpn1/2/13) and six ATPases (Rpt1-6) [2]. Phosphorylation of Rpn6 enhances proteasome ATPase activity and promotes the formation of doubly capped (30S) proteasome, hence accelerating the degradation of short-lived proteins [3].
Domain
LA [auth Q]PF1850326S proteasome subunit RPN6 C-terminal helix domain (RPN6_C_helix)26S proteasome subunit RPN6 C-terminal helix domainThis is the C-terminal helix domain found in RPN6, a component of the 26S proteasome. The C-terminal helices are essential for lid assembly [1, 2]. Domain
LA [auth Q]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
KA [auth P]PF1809826S proteasome regulatory subunit RPN5 C-terminal domain (RPN5_C)26S proteasome regulatory subunit RPN5 C-terminal domainThis is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degrada ...This is the C-terminal domain of the 26S proteasome regulatory subunit RPN5 proteins.This helical domain can be found adjacent to Pfam:PF01399. The 26S proteasome is the major ATP-dependent protease in eukaryotes. Three subcomplexes form this degradation machine: the lid, the base, and the core. The helices found at the C terminus of each lid subunit form a helical bundle that directs the ordered self-assembly of the lid subcomplex. This domain which comprises the tail of RPN5 along with the tail of Rpn9, are important for Rpn12 binding to the lid [1].
Domain
KA [auth P]PF22241PSMD12/CSN4, N-terminal (PSMD12-CSN4_N)PSMD12/CSN4, N-terminal- Repeat
KA [auth P]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
JA [auth O]PF18261Rpn9 C-terminal helix (Rpn9_C)Rpn9 C-terminal helix- Family
JA [auth O]PF22037PSD13 N-terminal repeats (PSD13_N)PSD13 N-terminal repeats- Repeat
JA [auth O]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. Domain
IA [auth N]PF13646HEAT repeats (HEAT_2)HEAT repeats- Repeat
IA [auth N]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
IA [auth N]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
IA [auth N]PF1800426S proteasome regulatory subunit RPN2 C-terminal domain (RPN2_C)26S proteasome regulatory subunit RPN2 C-terminal domainThis is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating inter ...This is the C-terminal domain found in S. cerevisiae Rpn2 (26S proteasome regulatory subunit RPN2) as well as other eukaryotic species. A study revealed that the C-terminal 52 residues of the Rpn2 C-terminal domain are responsible for mediating interactions with the ubiquitin-binding subunit Rpn13. Futhermore, the extreme C-terminal 20 or 21 residues of Rpn2 (926-945 or 925-945) of S. cerevisiae, were shown to be equally effective at binding Rpn13. Multiple sequence alignments indicate that Rpn2 orthologs are highly conserved in this C-terminal region and share characteristic acidic, aromatic, and proline residues, suggesting a common function. In the structure of Rpn2 from S. cerevisiae , this region is exposed and disordered, and is thus accessible for associating with Rpn13. The Rpn2 binding surface of human Rpn13 has been mapped by nuclear magnetic resonance titration to one surface of its Pru domain [1].
Domain
IA [auth N]PF2150526S proteasome subunit RPN2, N-terminal domain (RPN2_N)26S proteasome subunit RPN2, N-terminal domain- Repeat
IA [auth N]PF01851Proteasome/cyclosome repeat (PC_rep)Proteasome/cyclosome repeat- Repeat
B [auth 2],
I [auth i]		PF12465Proteasome beta subunits C terminal (Pr_beta_C)Proteasome beta subunits C terminal- Family
GA [auth L]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
GA [auth L]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
GA [auth L]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
GA [auth L]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
GA [auth L]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
FA [auth K]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
FA [auth K]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
FA [auth K]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
FA [auth K]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
EA [auth J]PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
EA [auth J]PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
EA [auth J]PF16450Proteasomal ATPase OB C-terminal domain (Prot_ATP_ID_OB_C)Proteasomal ATPase OB C-terminal domainThis is the C-terminal interdomain (ID) or oligonucleotide binding (OB) domain of proteasomal ATPase [1-2] Domain
EA [auth J]PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
EA [auth J]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
BA [auth k],
U [auth G]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
BA [auth k],
U [auth G]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
AA [auth l],
T [auth F]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
AA [auth l],
T [auth F]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family
S [auth E],
Z [auth m]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
Q [auth C],
X [auth d]		PF00227Proteasome subunit (Proteasome)Proteasome subunitThe proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity ...The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes [1]. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria [1]. The second is call beta-proteobacteria proteasome homologue (BPH) [1].
Domain
Q [auth C],
X [auth d]		PF10584Proteasome subunit A N-terminal signature (Proteasome_A_N)Proteasome subunit A N-terminal signature- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth 6],
M [auth e]		Proteasome subunit beta type-6-
G [auth 7],
N [auth a]		Proteasome subunit beta type-7-
P [auth B],
W [auth j]		Proteasome subunit alpha type-2-
R [auth D],
Y [auth n]		Proteasome subunit alpha type-4-
CA [auth H]26S protease regulatory subunit 7 homolog
DA [auth I]26S protease regulatory subunit 4 homolog
HA [auth M]26S protease regulatory subunit 6A
O [auth A],
V [auth c]		Proteasome subunit alpha type-1-
E [auth 5],
L [auth f]		Proteasome subunit beta type-5
D [auth 4],
K [auth g]		Proteasome subunit beta type-4
UA [auth Z]26S proteasome regulatory subunit RPN1
TA [auth Y]26S proteasome complex subunit SEM1
SA [auth X]26S proteasome regulatory subunit RPN13
RA [auth W]26S proteasome regulatory subunit RPN10
C [auth 3],
J [auth h]		Proteasome subunit beta type-3
QA [auth V]Ubiquitin carboxyl-terminal hydrolase RPN11
PA [auth U]26S proteasome regulatory subunit RPN8
OA [auth T]26S proteasome regulatory subunit RPN12-
NA [auth S]26S proteasome regulatory subunit RPN3
MA [auth R]26S proteasome regulatory subunit RPN7
LA [auth Q]26S proteasome regulatory subunit RPN6
KA [auth P]26S proteasome regulatory subunit RPN5-
JA [auth O]26S proteasome regulatory subunit RPN9
IA [auth N]26S proteasome regulatory subunit RPN2
B [auth 2],
I [auth i]		Proteasome subunit beta type-2
GA [auth L]26S protease subunit RPT4
FA [auth K]26S protease regulatory subunit 6B homolog
EA [auth J]26S protease regulatory subunit 8 homolog
BA [auth k],
U [auth G]		Probable proteasome subunit alpha type-7
AA [auth l],
T [auth F]		Proteasome subunit alpha type-6-
S [auth E],
Z [auth m]		Proteasome subunit alpha type-5-
Q [auth C],
X [auth d]		Proteasome subunit alpha type-3-
A [auth 1],
H [auth b]		Proteasome subunit beta type-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 6],
M [auth e]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
F [auth 6],
M [auth e]		IPR023333Proteasome B-type subunitFamily
F [auth 6],
M [auth e]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
F [auth 6],
M [auth e]		IPR001353Proteasome, subunit alpha/betaFamily
G [auth 7],
N [auth a]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
G [auth 7],
N [auth a]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
G [auth 7],
N [auth a]		IPR023333Proteasome B-type subunitFamily
G [auth 7],
N [auth a]		IPR016295Proteasome subunit beta 4Family
G [auth 7],
N [auth a]		IPR001353Proteasome, subunit alpha/betaFamily
P [auth B],
W [auth j]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
P [auth B],
W [auth j]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
P [auth B],
W [auth j]		IPR050115Proteasome subunit alphaFamily
P [auth B],
W [auth j]		IPR023332Proteasome alpha-type subunitFamily
P [auth B],
W [auth j]		IPR001353Proteasome, subunit alpha/betaFamily
R [auth D],
Y [auth n]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
R [auth D],
Y [auth n]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
R [auth D],
Y [auth n]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
R [auth D],
Y [auth n]		IPR050115Proteasome subunit alphaFamily
R [auth D],
Y [auth n]		IPR023332Proteasome alpha-type subunitFamily
R [auth D],
Y [auth n]		IPR001353Proteasome, subunit alpha/betaFamily
CA [auth H]IPR04872326S proteasome regulatory subunit 7-like, OB domainDomain
CA [auth H]IPR05022126S Proteasome Regulatory ATPaseFamily
CA [auth H]IPR041569AAA ATPase, AAA+ lid domainDomain
CA [auth H]IPR003960ATPase, AAA-type, conserved siteConserved Site
CA [auth H]IPR003593AAA+ ATPase domainDomain
CA [auth H]IPR003959ATPase, AAA-type, coreDomain
CA [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth H]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
DA [auth I]IPR05022126S Proteasome Regulatory ATPaseFamily
DA [auth I]IPR041569AAA ATPase, AAA+ lid domainDomain
DA [auth I]IPR032501Proteasomal ATPase, second OB domainDomain
DA [auth I]IPR003960ATPase, AAA-type, conserved siteConserved Site
DA [auth I]IPR003593AAA+ ATPase domainDomain
DA [auth I]IPR003959ATPase, AAA-type, coreDomain
DA [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth I]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HA [auth M]IPR05022126S Proteasome Regulatory ATPaseFamily
HA [auth M]IPR041569AAA ATPase, AAA+ lid domainDomain
HA [auth M]IPR032501Proteasomal ATPase, second OB domainDomain
HA [auth M]IPR003960ATPase, AAA-type, conserved siteConserved Site
HA [auth M]IPR003593AAA+ ATPase domainDomain
HA [auth M]IPR003959ATPase, AAA-type, coreDomain
HA [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth M]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth A],
V [auth c]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
O [auth A],
V [auth c]		IPR034642Proteasome subunit alpha6Family
O [auth A],
V [auth c]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
O [auth A],
V [auth c]		IPR050115Proteasome subunit alphaFamily
O [auth A],
V [auth c]		IPR023332Proteasome alpha-type subunitFamily
O [auth A],
V [auth c]		IPR001353Proteasome, subunit alpha/betaFamily
E [auth 5],
L [auth f]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
E [auth 5],
L [auth f]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
E [auth 5],
L [auth f]		IPR023333Proteasome B-type subunitFamily
E [auth 5],
L [auth f]		IPR001353Proteasome, subunit alpha/betaFamily
E [auth 5],
L [auth f]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
D [auth 4],
K [auth g]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
D [auth 4],
K [auth g]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
D [auth 4],
K [auth g]		IPR023333Proteasome B-type subunitFamily
D [auth 4],
K [auth g]		IPR001353Proteasome, subunit alpha/betaFamily
D [auth 4],
K [auth g]		IPR035206Proteasome subunit beta 2Family
UA [auth Z]IPR04143326S proteasome non-ATPase regulatory subunit RPN1, C-terminalDomain
UA [auth Z]IPR016024Armadillo-type foldHomologous Superfamily
UA [auth Z]IPR002015Proteasome/cyclosome repeatRepeat
UA [auth Z]IPR01664326S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunitFamily
UA [auth Z]IPR011989Armadillo-like helicalHomologous Superfamily
UA [auth Z]IPR040892RPN1, N-terminalDomain
TA [auth Y]IPR007834DSS1/SEM1Family
SA [auth X]IPR044868Rpn13/ADRM1, Pru domainDomain
SA [auth X]IPR006773Proteasomal ubiquitin receptor Rpn13/ADRM1Family
SA [auth X]IPR038633Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamilyHomologous Superfamily
RA [auth W]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
RA [auth W]IPR02704026S proteasome non-ATPase regulatory subunit 4Family
RA [auth W]IPR002035von Willebrand factor, type ADomain
RA [auth W]IPR003903Ubiquitin interacting motifConserved Site
C [auth 3],
J [auth h]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
C [auth 3],
J [auth h]		IPR023333Proteasome B-type subunitFamily
C [auth 3],
J [auth h]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
C [auth 3],
J [auth h]		IPR001353Proteasome, subunit alpha/betaFamily
C [auth 3],
J [auth h]		IPR033811Proteasome beta 3 subunitFamily
QA [auth V]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
QA [auth V]IPR037518MPN domainDomain
QA [auth V]IPR05626326S proteasome regulatory subunit RPN11, C-terminal domainDomain
QA [auth V]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
PA [auth U]IPR024969EIF3F/CSN6-like, C-terminalDomain
PA [auth U]IPR037518MPN domainDomain
PA [auth U]IPR03385826S Proteasome non-ATPase regulatory subunit 7/8Family
PA [auth U]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
OA [auth T]IPR000717Proteasome component (PCI) domainDomain
OA [auth T]IPR00674626S proteasome non-ATPase regulatory subunit Rpn12Family
OA [auth T]IPR033464CSN8/PSMD8/EIF3KDomain
NA [auth S]IPR000717Proteasome component (PCI) domainDomain
NA [auth S]IPR01358626S proteasome non-ATPase regulatory subunit 3, C-terminalDomain
NA [auth S]IPR05798526S proteasome non-ATPase regulatory subunit 3, N-terminal TPR repeatsDomain
NA [auth S]IPR050756COP9 signalosome complex subunit 3Family
NA [auth S]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
MA [auth R]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
MA [auth R]IPR01958526S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1Family
MA [auth R]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
MA [auth R]IPR04954926S proteasome regulatory subunit RPN7/PSMD6, C-terminal helixDomain
MA [auth R]IPR000717Proteasome component (PCI) domainDomain
MA [auth R]IPR04513526S proteasome regulatory subunit Rpn7, N-terminalDomain
MA [auth R]IPR019734Tetratricopeptide repeatRepeat
LA [auth Q]IPR05087126S Proteasome and COP9 Signalosome ComponentsFamily
LA [auth Q]IPR0407806S proteasome subunit Rpn6, C-terminal helix domainDomain
LA [auth Q]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
LA [auth Q]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
LA [auth Q]IPR04077326S proteasome regulatory subunit Rpn6, N-terminalDomain
LA [auth Q]IPR000717Proteasome component (PCI) domainDomain
KA [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
KA [auth P]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
KA [auth P]IPR000717Proteasome component (PCI) domainDomain
KA [auth P]IPR04089626S proteasome regulatory subunit RPN5, C-terminal domainDomain
KA [auth P]IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Family
KA [auth P]IPR054559PSMD12/CSN4-like, N-terminalDomain
JA [auth O]IPR054179PSD13, N-terminalDomain
JA [auth O]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
JA [auth O]IPR03529826S Proteasome non-ATPase regulatory subunit 13Family
JA [auth O]IPR000717Proteasome component (PCI) domainDomain
JA [auth O]IPR040798Rpn9, C-terminal helixDomain
IA [auth N]IPR04062326S proteasome regulatory subunit RPN2, C-terminalDomain
IA [auth N]IPR016024Armadillo-type foldHomologous Superfamily
IA [auth N]IPR002015Proteasome/cyclosome repeatRepeat
IA [auth N]IPR011989Armadillo-like helicalHomologous Superfamily
IA [auth N]IPR04857026S proteasome non-ATPase regulatory subunit 1/RPN2, N-terminal domainDomain
IA [auth N]IPR01664226S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunitFamily
B [auth 2],
I [auth i]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
B [auth 2],
I [auth i]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
B [auth 2],
I [auth i]		IPR024689Proteasome beta subunit, C-terminalDomain
B [auth 2],
I [auth i]		IPR023333Proteasome B-type subunitFamily
B [auth 2],
I [auth i]		IPR001353Proteasome, subunit alpha/betaFamily
B [auth 2],
I [auth i]		IPR000243Peptidase T1A, proteasome beta-subunitFamily
GA [auth L]IPR05022126S Proteasome Regulatory ATPaseFamily
GA [auth L]IPR041569AAA ATPase, AAA+ lid domainDomain
GA [auth L]IPR032501Proteasomal ATPase, second OB domainDomain
GA [auth L]IPR003960ATPase, AAA-type, conserved siteConserved Site
GA [auth L]IPR003593AAA+ ATPase domainDomain
GA [auth L]IPR003959ATPase, AAA-type, coreDomain
GA [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth L]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth K]IPR05022126S Proteasome Regulatory ATPaseFamily
FA [auth K]IPR032501Proteasomal ATPase, second OB domainDomain
FA [auth K]IPR003960ATPase, AAA-type, conserved siteConserved Site
FA [auth K]IPR003593AAA+ ATPase domainDomain
FA [auth K]IPR003959ATPase, AAA-type, coreDomain
FA [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth K]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
EA [auth J]IPR05022126S Proteasome Regulatory ATPaseFamily
EA [auth J]IPR041569AAA ATPase, AAA+ lid domainDomain
EA [auth J]IPR032501Proteasomal ATPase, second OB domainDomain
EA [auth J]IPR003960ATPase, AAA-type, conserved siteConserved Site
EA [auth J]IPR003593AAA+ ATPase domainDomain
EA [auth J]IPR003959ATPase, AAA-type, coreDomain
EA [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BA [auth k],
U [auth G]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
BA [auth k],
U [auth G]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
BA [auth k],
U [auth G]		IPR050115Proteasome subunit alphaFamily
BA [auth k],
U [auth G]		IPR023332Proteasome alpha-type subunitFamily
BA [auth k],
U [auth G]		IPR001353Proteasome, subunit alpha/betaFamily
AA [auth l],
T [auth F]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
AA [auth l],
T [auth F]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
AA [auth l],
T [auth F]		IPR050115Proteasome subunit alphaFamily
AA [auth l],
T [auth F]		IPR023332Proteasome alpha-type subunitFamily
AA [auth l],
T [auth F]		IPR001353Proteasome, subunit alpha/betaFamily
S [auth E],
Z [auth m]		IPR033812Proteasome subunit alpha5Family
S [auth E],
Z [auth m]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
S [auth E],
Z [auth m]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
S [auth E],
Z [auth m]		IPR050115Proteasome subunit alphaFamily
S [auth E],
Z [auth m]		IPR023332Proteasome alpha-type subunitFamily
S [auth E],
Z [auth m]		IPR001353Proteasome, subunit alpha/betaFamily
Q [auth C],
X [auth d]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
Q [auth C],
X [auth d]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
Q [auth C],
X [auth d]		IPR000426Proteasome alpha-subunit, N-terminal domainDomain
Q [auth C],
X [auth d]		IPR050115Proteasome subunit alphaFamily
Q [auth C],
X [auth d]		IPR023332Proteasome alpha-type subunitFamily
Q [auth C],
X [auth d]		IPR001353Proteasome, subunit alpha/betaFamily
A [auth 1],
H [auth b]		IPR016050Proteasome beta-type subunit, conserved siteConserved Site
A [auth 1],
H [auth b]		IPR029055Nucleophile aminohydrolases, N-terminalHomologous Superfamily
A [auth 1],
H [auth b]		IPR023333Proteasome B-type subunitFamily
A [auth 1],
H [auth b]		IPR001353Proteasome, subunit alpha/betaFamily
A [auth 1],
H [auth b]		IPR000243Peptidase T1A, proteasome beta-subunitFamily